Strain Fitness in Variovorax sp. SCN45 around GFF6814

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6812 and GFF6813 are separated by 81 nucleotidesGFF6813 and GFF6814 are separated by 19 nucleotidesGFF6814 and GFF6815 are separated by 156 nucleotides GFF6812 - no description, at 57,958 to 59,622 GFF6812 GFF6813 - no description, at 59,704 to 59,955 GFF6813 GFF6814 - NADH dehydrogenase (EC 1.6.99.3), at 59,975 to 61,330 GFF6814 GFF6815 - FIG00453801: hypothetical protein, at 61,487 to 62,746 GFF6815 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.987 kb on + strand, within GFF6812at 58.988 kb on - strand, within GFF6812at 58.988 kb on - strand, within GFF6812at 58.988 kb on - strand, within GFF6812at 58.988 kb on - strand, within GFF6812at 59.048 kb on + strand, within GFF6812at 59.048 kb on + strand, within GFF6812at 59.060 kb on + strand, within GFF6812at 59.060 kb on - strand, within GFF6812at 59.132 kb on + strand, within GFF6812at 59.255 kb on + strand, within GFF6812at 59.255 kb on + strand, within GFF6812at 59.255 kb on + strand, within GFF6812at 59.256 kb on - strand, within GFF6812at 59.275 kb on + strand, within GFF6812at 59.405 kb on + strand, within GFF6812at 59.405 kb on + strand, within GFF6812at 59.405 kb on + strand, within GFF6812at 59.405 kb on + strand, within GFF6812at 59.405 kb on + strand, within GFF6812at 59.406 kb on - strand, within GFF6812at 59.406 kb on - strand, within GFF6812at 59.406 kb on - strand, within GFF6812at 59.406 kb on - strand, within GFF6812at 59.421 kb on - strand, within GFF6812at 59.421 kb on - strand, within GFF6812at 59.873 kb on + strand, within GFF6813at 59.873 kb on + strand, within GFF6813at 59.873 kb on + strand, within GFF6813at 59.874 kb on - strand, within GFF6813at 59.874 kb on - strand, within GFF6813at 60.036 kb on + strandat 60.037 kb on - strandat 60.093 kb on + strandat 60.094 kb on - strandat 60.094 kb on - strandat 60.219 kb on + strand, within GFF6814at 60.517 kb on + strand, within GFF6814at 60.528 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.972 kb on + strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 60.973 kb on - strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.011 kb on + strand, within GFF6814at 61.170 kb on + strand, within GFF6814at 61.170 kb on + strand, within GFF6814at 61.171 kb on - strand, within GFF6814at 61.342 kb on + strandat 61.343 kb on - strandat 61.343 kb on - strandat 61.455 kb on + strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.698 kb on - strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.701 kb on + strand, within GFF6815at 61.702 kb on - strand, within GFF6815at 61.702 kb on - strand, within GFF6815at 61.724 kb on + strand, within GFF6815at 61.724 kb on + strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.725 kb on - strand, within GFF6815at 61.739 kb on + strand, within GFF6815at 61.742 kb on + strand, within GFF6815at 61.742 kb on + strand, within GFF6815at 61.743 kb on - strand, within GFF6815at 61.743 kb on - strand, within GFF6815at 61.820 kb on + strand, within GFF6815at 61.894 kb on + strand, within GFF6815at 61.894 kb on + strand, within GFF6815at 61.991 kb on + strand, within GFF6815at 61.991 kb on + strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 61.992 kb on - strand, within GFF6815at 62.282 kb on + strand, within GFF6815at 62.282 kb on + strand, within GFF6815

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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58,987 + GFF6812 0.62 +0.2
58,987 + GFF6812 0.62 -0.4
58,987 + GFF6812 0.62 +0.0
58,987 + GFF6812 0.62 +0.8
58,987 + GFF6812 0.62 +0.4
58,987 + GFF6812 0.62 -0.1
58,987 + GFF6812 0.62 -0.2
58,988 - GFF6812 0.62 +0.2
58,988 - GFF6812 0.62 +0.1
58,988 - GFF6812 0.62 +0.1
58,988 - GFF6812 0.62 -0.3
59,048 + GFF6812 0.65 -1.1
59,048 + GFF6812 0.65 -0.7
59,060 + GFF6812 0.66 +0.1
59,060 - GFF6812 0.66 -0.6
59,132 + GFF6812 0.71 +0.2
59,255 + GFF6812 0.78 -0.1
59,255 + GFF6812 0.78 +0.6
59,255 + GFF6812 0.78 -0.3
59,256 - GFF6812 0.78 +1.2
59,275 + GFF6812 0.79 -0.3
59,405 + GFF6812 0.87 +0.8
59,405 + GFF6812 0.87 -1.2
59,405 + GFF6812 0.87 +0.6
59,405 + GFF6812 0.87 -0.3
59,405 + GFF6812 0.87 -0.9
59,406 - GFF6812 0.87 +0.3
59,406 - GFF6812 0.87 -0.6
59,406 - GFF6812 0.87 -0.7
59,406 - GFF6812 0.87 -1.7
59,421 - GFF6812 0.88 -2.1
59,421 - GFF6812 0.88 +0.0
59,873 + GFF6813 0.67 -2.2
59,873 + GFF6813 0.67 +0.7
59,873 + GFF6813 0.67 -0.2
59,874 - GFF6813 0.67 -0.4
59,874 - GFF6813 0.67 -0.1
60,036 + +0.5
60,037 - -0.8
60,093 + +0.5
60,094 - -1.9
60,094 - +0.8
60,219 + GFF6814 0.18 -0.7
60,517 + GFF6814 0.40 -0.2
60,528 + GFF6814 0.41 -0.4
60,972 + GFF6814 0.74 -0.3
60,972 + GFF6814 0.74 +0.5
60,972 + GFF6814 0.74 -0.2
60,972 + GFF6814 0.74 -0.5
60,972 + GFF6814 0.74 -0.3
60,972 + GFF6814 0.74 +0.4
60,972 + GFF6814 0.74 -1.0
60,972 + GFF6814 0.74 -0.2
60,973 - GFF6814 0.74 -0.4
60,973 - GFF6814 0.74 +0.2
60,973 - GFF6814 0.74 -0.3
60,973 - GFF6814 0.74 -0.6
60,973 - GFF6814 0.74 -0.4
61,011 + GFF6814 0.76 -1.1
61,011 + GFF6814 0.76 -1.5
61,011 + GFF6814 0.76 +0.1
61,011 + GFF6814 0.76 +1.1
61,170 + GFF6814 0.88 -0.4
61,170 + GFF6814 0.88 -1.1
61,171 - GFF6814 0.88 -0.8
61,342 + +1.0
61,343 - -0.5
61,343 - -1.3
61,455 + +0.4
61,456 - +0.4
61,456 - -1.1
61,456 - +1.1
61,698 - GFF6815 0.17 -0.3
61,698 - GFF6815 0.17 -1.0
61,698 - GFF6815 0.17 -0.4
61,698 - GFF6815 0.17 -0.5
61,701 + GFF6815 0.17 +0.4
61,701 + GFF6815 0.17 -0.4
61,701 + GFF6815 0.17 -0.1
61,701 + GFF6815 0.17 +0.1
61,701 + GFF6815 0.17 -0.2
61,701 + GFF6815 0.17 +1.4
61,702 - GFF6815 0.17 -0.5
61,702 - GFF6815 0.17 -1.1
61,724 + GFF6815 0.19 -0.2
61,724 + GFF6815 0.19 +0.2
61,725 - GFF6815 0.19 -1.4
61,725 - GFF6815 0.19 -0.2
61,725 - GFF6815 0.19 -0.9
61,739 + GFF6815 0.20 -0.7
61,742 + GFF6815 0.20 -0.4
61,742 + GFF6815 0.20 +0.3
61,743 - GFF6815 0.20 -0.9
61,743 - GFF6815 0.20 -0.2
61,820 + GFF6815 0.26 -1.6
61,894 + GFF6815 0.32 +0.7
61,894 + GFF6815 0.32 -0.7
61,991 + GFF6815 0.40 +0.6
61,991 + GFF6815 0.40 +1.9
61,992 - GFF6815 0.40 -0.0
61,992 - GFF6815 0.40 -1.2
61,992 - GFF6815 0.40 -1.1
62,282 + GFF6815 0.63 -0.6
62,282 + GFF6815 0.63 -0.2

Or see this region's nucleotide sequence