Strain Fitness in Variovorax sp. SCN45 around GFF6793

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6792 and GFF6793 overlap by 4 nucleotidesGFF6793 and GFF6794 are separated by 264 nucleotides GFF6791 - FIG00538730: hypothetical protein, at 40,106 to 40,393 GFF6791 GFF6792 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 40,390 to 41,394 GFF6792 GFF6793 - hypothetical protein, at 41,391 to 41,933 GFF6793 GFF6794 - hypothetical protein, at 42,198 to 43,739 GFF6794 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 40.595 kb on + strand, within GFF6792at 40.595 kb on + strand, within GFF6792at 40.595 kb on + strand, within GFF6792at 40.596 kb on - strand, within GFF6792at 40.730 kb on + strand, within GFF6792at 40.730 kb on + strand, within GFF6792at 40.730 kb on + strand, within GFF6792at 40.731 kb on - strand, within GFF6792at 40.731 kb on - strand, within GFF6792at 41.024 kb on + strand, within GFF6792at 41.025 kb on - strand, within GFF6792at 41.025 kb on - strand, within GFF6792at 41.025 kb on - strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.057 kb on + strand, within GFF6792at 41.058 kb on - strand, within GFF6792at 41.446 kb on + strand, within GFF6793at 41.446 kb on + strand, within GFF6793at 41.446 kb on + strand, within GFF6793at 41.446 kb on + strand, within GFF6793at 41.446 kb on + strand, within GFF6793at 41.447 kb on - strand, within GFF6793at 41.447 kb on - strand, within GFF6793at 41.447 kb on - strand, within GFF6793at 41.633 kb on - strand, within GFF6793at 41.633 kb on - strand, within GFF6793at 41.633 kb on - strand, within GFF6793at 41.851 kb on + strand, within GFF6793at 41.852 kb on - strand, within GFF6793at 41.852 kb on - strand, within GFF6793at 41.852 kb on - strand, within GFF6793at 41.852 kb on - strand, within GFF6793at 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.975 kb on + strandat 41.976 kb on - strandat 41.976 kb on - strandat 41.976 kb on - strandat 41.976 kb on - strandat 42.027 kb on + strandat 42.027 kb on + strandat 42.028 kb on - strandat 42.028 kb on - strandat 42.028 kb on - strandat 42.028 kb on - strandat 42.028 kb on - strandat 42.062 kb on + strandat 42.063 kb on - strandat 42.079 kb on + strandat 42.079 kb on + strandat 42.079 kb on + strandat 42.079 kb on + strandat 42.080 kb on - strandat 42.080 kb on - strandat 42.080 kb on - strandat 42.080 kb on - strandat 42.423 kb on + strand, within GFF6794at 42.423 kb on + strand, within GFF6794at 42.423 kb on + strand, within GFF6794at 42.423 kb on + strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.424 kb on - strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.426 kb on + strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.427 kb on - strand, within GFF6794at 42.483 kb on - strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.618 kb on + strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.619 kb on - strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.621 kb on + strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.622 kb on - strand, within GFF6794at 42.642 kb on + strand, within GFF6794at 42.643 kb on - strand, within GFF6794at 42.643 kb on - strand, within GFF6794at 42.643 kb on - strand, within GFF6794at 42.643 kb on - strand, within GFF6794at 42.774 kb on + strand, within GFF6794at 42.775 kb on - strand, within GFF6794at 42.775 kb on - strand, within GFF6794at 42.775 kb on - strand, within GFF6794

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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40,595 + GFF6792 0.20 +0.1
40,595 + GFF6792 0.20 -0.5
40,595 + GFF6792 0.20 +0.1
40,596 - GFF6792 0.20 -0.2
40,730 + GFF6792 0.34 -0.7
40,730 + GFF6792 0.34 +0.3
40,730 + GFF6792 0.34 +0.5
40,731 - GFF6792 0.34 +1.2
40,731 - GFF6792 0.34 -0.4
41,024 + GFF6792 0.63 +0.3
41,025 - GFF6792 0.63 +0.2
41,025 - GFF6792 0.63 -0.1
41,025 - GFF6792 0.63 -0.2
41,057 + GFF6792 0.66 -0.9
41,057 + GFF6792 0.66 -0.7
41,057 + GFF6792 0.66 +0.4
41,057 + GFF6792 0.66 +0.8
41,057 + GFF6792 0.66 +0.3
41,057 + GFF6792 0.66 -0.2
41,057 + GFF6792 0.66 -0.0
41,058 - GFF6792 0.66 +0.0
41,446 + GFF6793 0.10 +0.1
41,446 + GFF6793 0.10 +0.4
41,446 + GFF6793 0.10 -0.3
41,446 + GFF6793 0.10 +0.2
41,446 + GFF6793 0.10 -0.5
41,447 - GFF6793 0.10 +1.0
41,447 - GFF6793 0.10 -1.2
41,447 - GFF6793 0.10 +0.1
41,633 - GFF6793 0.45 +1.4
41,633 - GFF6793 0.45 -0.5
41,633 - GFF6793 0.45 +0.2
41,851 + GFF6793 0.85 +0.1
41,852 - GFF6793 0.85 +0.4
41,852 - GFF6793 0.85 +0.4
41,852 - GFF6793 0.85 -0.3
41,852 - GFF6793 0.85 +0.9
41,975 + -0.2
41,975 + -1.6
41,975 + +0.6
41,975 + -0.1
41,975 + +0.4
41,975 + -0.7
41,975 + +0.2
41,975 + -0.7
41,975 + -1.4
41,976 - -0.1
41,976 - -0.1
41,976 - -0.6
41,976 - -1.7
42,027 + -0.3
42,027 + -0.8
42,028 - -1.1
42,028 - +0.9
42,028 - -1.0
42,028 - +0.0
42,028 - -0.1
42,062 + -0.9
42,063 - -1.1
42,079 + -0.1
42,079 + -0.1
42,079 + -0.3
42,079 + +1.6
42,080 - -0.1
42,080 - -0.4
42,080 - -0.3
42,080 - -0.6
42,423 + GFF6794 0.15 +0.4
42,423 + GFF6794 0.15 -0.4
42,423 + GFF6794 0.15 +0.0
42,423 + GFF6794 0.15 +0.3
42,424 - GFF6794 0.15 +0.6
42,424 - GFF6794 0.15 +0.7
42,424 - GFF6794 0.15 -0.3
42,424 - GFF6794 0.15 -0.8
42,424 - GFF6794 0.15 +0.2
42,424 - GFF6794 0.15 -0.2
42,426 + GFF6794 0.15 -0.1
42,426 + GFF6794 0.15 +0.1
42,426 + GFF6794 0.15 -0.5
42,426 + GFF6794 0.15 +0.2
42,426 + GFF6794 0.15 -1.9
42,426 + GFF6794 0.15 -1.2
42,426 + GFF6794 0.15 -1.1
42,426 + GFF6794 0.15 +0.2
42,426 + GFF6794 0.15 +1.3
42,426 + GFF6794 0.15 -0.7
42,426 + GFF6794 0.15 -0.2
42,426 + GFF6794 0.15 +0.5
42,426 + GFF6794 0.15 -0.2
42,426 + GFF6794 0.15 +0.8
42,427 - GFF6794 0.15 -0.4
42,427 - GFF6794 0.15 -0.2
42,427 - GFF6794 0.15 -0.0
42,427 - GFF6794 0.15 -0.9
42,427 - GFF6794 0.15 -0.6
42,427 - GFF6794 0.15 -0.5
42,427 - GFF6794 0.15 +0.9
42,427 - GFF6794 0.15 +0.7
42,427 - GFF6794 0.15 -0.3
42,427 - GFF6794 0.15 +0.3
42,427 - GFF6794 0.15 -0.2
42,427 - GFF6794 0.15 +0.8
42,483 - GFF6794 0.18 -0.6
42,618 + GFF6794 0.27 -0.3
42,618 + GFF6794 0.27 +0.3
42,618 + GFF6794 0.27 -0.6
42,618 + GFF6794 0.27 -0.2
42,618 + GFF6794 0.27 +0.8
42,618 + GFF6794 0.27 -0.4
42,618 + GFF6794 0.27 +0.5
42,618 + GFF6794 0.27 -0.4
42,618 + GFF6794 0.27 +0.1
42,618 + GFF6794 0.27 +0.2
42,618 + GFF6794 0.27 +0.2
42,618 + GFF6794 0.27 +0.3
42,618 + GFF6794 0.27 +0.2
42,618 + GFF6794 0.27 -1.2
42,619 - GFF6794 0.27 +1.0
42,619 - GFF6794 0.27 -0.1
42,619 - GFF6794 0.27 -0.1
42,619 - GFF6794 0.27 +0.7
42,619 - GFF6794 0.27 -2.5
42,619 - GFF6794 0.27 +0.1
42,619 - GFF6794 0.27 -0.4
42,621 + GFF6794 0.27 -0.6
42,621 + GFF6794 0.27 -2.2
42,621 + GFF6794 0.27 +0.1
42,621 + GFF6794 0.27 +0.8
42,621 + GFF6794 0.27 -0.7
42,621 + GFF6794 0.27 -0.3
42,621 + GFF6794 0.27 -0.2
42,621 + GFF6794 0.27 -0.4
42,622 - GFF6794 0.27 -0.5
42,622 - GFF6794 0.27 -0.8
42,622 - GFF6794 0.27 +1.9
42,622 - GFF6794 0.27 +0.3
42,622 - GFF6794 0.27 -0.5
42,622 - GFF6794 0.27 -0.2
42,642 + GFF6794 0.29 -0.5
42,643 - GFF6794 0.29 -0.4
42,643 - GFF6794 0.29 -0.4
42,643 - GFF6794 0.29 -0.1
42,643 - GFF6794 0.29 -0.5
42,774 + GFF6794 0.37 +2.0
42,775 - GFF6794 0.37 -1.5
42,775 - GFF6794 0.37 +0.6
42,775 - GFF6794 0.37 -0.5

Or see this region's nucleotide sequence