Strain Fitness in Variovorax sp. SCN45 around GFF661

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF660 and GFF661 are separated by 163 nucleotidesGFF661 and GFF662 are separated by 744 nucleotides GFF660 - FIG00974024: hypothetical protein, at 713,556 to 714,377 GFF660 GFF661 - no description, at 714,541 to 714,855 GFF661 GFF662 - no description, at 715,600 to 715,866 GFF662 Position (kb) 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 713.596 kb on + strandat 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.649 kb on + strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.650 kb on - strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.694 kb on + strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.695 kb on - strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.802 kb on + strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.803 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.866 kb on - strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.874 kb on + strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.875 kb on - strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.955 kb on + strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 713.956 kb on - strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.039 kb on + strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.040 kb on - strand, within GFF660at 714.051 kb on + strand, within GFF660at 714.051 kb on + strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.052 kb on - strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.213 kb on + strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.214 kb on - strand, within GFF660at 714.398 kb on - strandat 714.440 kb on + strandat 714.441 kb on - strandat 714.441 kb on - strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.443 kb on + strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.444 kb on - strandat 714.463 kb on + strandat 714.498 kb on - strandat 714.498 kb on - strandat 714.498 kb on - strandat 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.574 kb on + strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.575 kb on - strand, within GFF661at 714.608 kb on + strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.609 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.765 kb on - strand, within GFF661at 714.911 kb on + strandat 714.945 kb on + strandat 715.039 kb on + strandat 715.039 kb on + strandat 715.040 kb on - strandat 715.051 kb on + strandat 715.052 kb on - strandat 715.054 kb on + strandat 715.063 kb on + strandat 715.147 kb on + strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.148 kb on - strandat 715.173 kb on + strandat 715.174 kb on - strandat 715.255 kb on + strandat 715.609 kb on + strandat 715.609 kb on + strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.610 kb on - strandat 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.630 kb on + strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.631 kb on - strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.723 kb on + strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.724 kb on - strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.786 kb on + strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662at 715.787 kb on - strand, within GFF662

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
713,596 + -0.5
713,649 + GFF660 0.11 +0.5
713,649 + GFF660 0.11 -0.4
713,649 + GFF660 0.11 +0.2
713,649 + GFF660 0.11 -0.8
713,649 + GFF660 0.11 +0.4
713,649 + GFF660 0.11 +1.2
713,649 + GFF660 0.11 -1.6
713,649 + GFF660 0.11 -0.9
713,650 - GFF660 0.11 -0.7
713,650 - GFF660 0.11 -2.1
713,650 - GFF660 0.11 -0.2
713,650 - GFF660 0.11 -1.7
713,650 - GFF660 0.11 -0.1
713,694 + GFF660 0.17 -1.8
713,694 + GFF660 0.17 +0.5
713,694 + GFF660 0.17 -0.2
713,694 + GFF660 0.17 +0.3
713,694 + GFF660 0.17 -2.7
713,695 - GFF660 0.17 -0.7
713,695 - GFF660 0.17 +0.9
713,695 - GFF660 0.17 -3.0
713,802 + GFF660 0.30 -0.4
713,802 + GFF660 0.30 -0.1
713,802 + GFF660 0.30 +0.5
713,802 + GFF660 0.30 +0.1
713,803 - GFF660 0.30 +0.5
713,803 - GFF660 0.30 -0.5
713,803 - GFF660 0.30 -1.4
713,866 - GFF660 0.38 +0.1
713,866 - GFF660 0.38 -0.6
713,866 - GFF660 0.38 -0.3
713,866 - GFF660 0.38 -0.6
713,866 - GFF660 0.38 +1.8
713,874 + GFF660 0.39 -0.0
713,874 + GFF660 0.39 -1.3
713,874 + GFF660 0.39 -1.4
713,874 + GFF660 0.39 -1.1
713,874 + GFF660 0.39 -0.2
713,874 + GFF660 0.39 +0.0
713,875 - GFF660 0.39 -0.8
713,875 - GFF660 0.39 +2.2
713,875 - GFF660 0.39 -0.4
713,875 - GFF660 0.39 -0.7
713,875 - GFF660 0.39 -0.1
713,955 + GFF660 0.49 +0.2
713,955 + GFF660 0.49 -0.6
713,955 + GFF660 0.49 -1.4
713,955 + GFF660 0.49 -0.2
713,955 + GFF660 0.49 -0.6
713,955 + GFF660 0.49 +2.2
713,956 - GFF660 0.49 -0.4
713,956 - GFF660 0.49 -0.2
713,956 - GFF660 0.49 -0.8
713,956 - GFF660 0.49 -0.1
713,956 - GFF660 0.49 -1.0
713,956 - GFF660 0.49 -0.6
714,039 + GFF660 0.59 +0.2
714,039 + GFF660 0.59 +0.2
714,039 + GFF660 0.59 -0.8
714,039 + GFF660 0.59 +0.2
714,039 + GFF660 0.59 -0.3
714,040 - GFF660 0.59 +1.2
714,040 - GFF660 0.59 -0.1
714,040 - GFF660 0.59 -0.4
714,040 - GFF660 0.59 +0.3
714,040 - GFF660 0.59 -0.4
714,040 - GFF660 0.59 -0.3
714,040 - GFF660 0.59 +0.1
714,051 + GFF660 0.60 +0.2
714,051 + GFF660 0.60 -0.3
714,052 - GFF660 0.60 -0.5
714,052 - GFF660 0.60 +0.6
714,052 - GFF660 0.60 +0.7
714,052 - GFF660 0.60 +0.2
714,213 + GFF660 0.80 -0.2
714,213 + GFF660 0.80 +1.5
714,213 + GFF660 0.80 -0.1
714,213 + GFF660 0.80 -0.2
714,214 - GFF660 0.80 +0.5
714,214 - GFF660 0.80 +0.2
714,214 - GFF660 0.80 -0.5
714,214 - GFF660 0.80 +0.3
714,214 - GFF660 0.80 -0.5
714,214 - GFF660 0.80 -0.5
714,214 - GFF660 0.80 -0.3
714,214 - GFF660 0.80 -0.6
714,398 - -0.6
714,440 + -0.0
714,441 - -1.4
714,441 - +0.2
714,443 + +1.1
714,443 + -0.3
714,443 + -0.6
714,443 + -0.7
714,443 + -0.3
714,443 + -0.2
714,443 + +1.2
714,443 + -0.4
714,443 + -0.8
714,443 + -1.0
714,443 + +0.0
714,443 + +0.8
714,443 + +0.1
714,443 + +0.1
714,443 + -0.3
714,444 - -0.2
714,444 - +0.3
714,444 - +0.7
714,444 - -0.2
714,444 - +0.2
714,444 - -0.5
714,444 - -0.0
714,444 - +0.0
714,444 - +0.6
714,444 - -0.1
714,463 + -0.1
714,498 - +0.7
714,498 - -0.2
714,498 - +0.2
714,574 + GFF661 0.10 -0.9
714,574 + GFF661 0.10 -0.3
714,574 + GFF661 0.10 -0.3
714,574 + GFF661 0.10 -0.3
714,574 + GFF661 0.10 +1.5
714,574 + GFF661 0.10 -0.2
714,574 + GFF661 0.10 -1.4
714,575 - GFF661 0.11 +0.3
714,575 - GFF661 0.11 -2.1
714,575 - GFF661 0.11 -0.8
714,575 - GFF661 0.11 -1.8
714,575 - GFF661 0.11 -1.0
714,575 - GFF661 0.11 -1.2
714,575 - GFF661 0.11 +0.6
714,608 + GFF661 0.21 +0.3
714,609 - GFF661 0.22 +0.3
714,609 - GFF661 0.22 -0.4
714,765 - GFF661 0.71 +0.2
714,765 - GFF661 0.71 -1.4
714,911 + -1.5
714,945 + +0.6
715,039 + -0.4
715,039 + -2.0
715,040 - -1.0
715,051 + +0.1
715,052 - -0.4
715,054 + -0.9
715,063 + -2.0
715,147 + -1.0
715,148 - -0.2
715,148 - +0.6
715,148 - -0.6
715,148 - -0.3
715,148 - -0.2
715,173 + -0.0
715,174 - +0.8
715,255 + -0.4
715,609 + -1.0
715,609 + -0.1
715,610 - -1.0
715,610 - -0.6
715,610 - +0.5
715,630 + GFF662 0.11 +0.3
715,630 + GFF662 0.11 +0.6
715,630 + GFF662 0.11 +0.2
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -1.0
715,630 + GFF662 0.11 -0.2
715,630 + GFF662 0.11 -0.6
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -0.6
715,630 + GFF662 0.11 +0.5
715,630 + GFF662 0.11 +0.6
715,630 + GFF662 0.11 -0.4
715,630 + GFF662 0.11 +1.0
715,630 + GFF662 0.11 +0.7
715,630 + GFF662 0.11 +0.3
715,630 + GFF662 0.11 +0.8
715,630 + GFF662 0.11 -0.3
715,630 + GFF662 0.11 +1.2
715,630 + GFF662 0.11 -0.7
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -0.8
715,630 + GFF662 0.11 -0.5
715,631 - GFF662 0.12 +0.8
715,631 - GFF662 0.12 +0.2
715,631 - GFF662 0.12 -0.4
715,631 - GFF662 0.12 +0.4
715,631 - GFF662 0.12 -0.6
715,631 - GFF662 0.12 -0.4
715,631 - GFF662 0.12 -0.0
715,631 - GFF662 0.12 +1.2
715,631 - GFF662 0.12 +0.7
715,631 - GFF662 0.12 -0.6
715,631 - GFF662 0.12 -0.1
715,631 - GFF662 0.12 -0.1
715,631 - GFF662 0.12 -0.5
715,631 - GFF662 0.12 -0.2
715,631 - GFF662 0.12 -0.5
715,723 + GFF662 0.46 -0.4
715,723 + GFF662 0.46 -0.1
715,723 + GFF662 0.46 -0.4
715,723 + GFF662 0.46 -0.1
715,723 + GFF662 0.46 -0.7
715,724 - GFF662 0.46 +0.7
715,724 - GFF662 0.46 +0.4
715,786 + GFF662 0.70 +0.2
715,786 + GFF662 0.70 -2.3
715,786 + GFF662 0.70 -0.2
715,786 + GFF662 0.70 -1.0
715,786 + GFF662 0.70 +1.0
715,786 + GFF662 0.70 -0.4
715,786 + GFF662 0.70 +0.8
715,786 + GFF662 0.70 +0.2
715,787 - GFF662 0.70 +0.6
715,787 - GFF662 0.70 -0.1
715,787 - GFF662 0.70 -0.4
715,787 - GFF662 0.70 +0.4
715,787 - GFF662 0.70 -0.8
715,787 - GFF662 0.70 +1.2
715,787 - GFF662 0.70 +0.2
715,787 - GFF662 0.70 -0.8
715,787 - GFF662 0.70 -0.0
715,787 - GFF662 0.70 -0.2
715,787 - GFF662 0.70 +0.4
715,787 - GFF662 0.70 -1.7

Or see this region's nucleotide sequence