Strain Fitness in Variovorax sp. SCN45 around GFF6513

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
7,966	+		GFF6512	0.40	-1.4
7,967	-		GFF6512	0.40	-1.9
7,967	-		GFF6512	0.40	-1.8
7,967	-		GFF6512	0.40	-0.2
8,370	+				+0.9
8,371	-				+0.8
8,769	+		GFF6513	0.14	-2.9
8,770	-		GFF6513	0.14	-2.3
9,122	+		GFF6513	0.33	-1.6
9,123	-		GFF6513	0.34	-2.1
9,317	-		GFF6513	0.44	-3.1
9,317	-		GFF6513	0.44	-1.6
9,658	+		GFF6513	0.63	-1.9
9,658	+		GFF6513	0.63	-0.2
9,658	+		GFF6513	0.63	-3.5
9,658	+		GFF6513	0.63	-0.0
9,658	+		GFF6513	0.63	-1.4
9,659	-		GFF6513	0.63	-0.3
9,659	-		GFF6513	0.63	-3.0
9,659	-		GFF6513	0.63	-2.5
9,685	+		GFF6513	0.64	-2.1
9,686	-		GFF6513	0.64	-4.3
10,079	-		GFF6513	0.86	-0.9
10,108	+		GFF6513	0.87	-2.4
10,109	-		GFF6513	0.87	-3.6
10,261	+				-0.6
10,262	-				-1.8
10,399	+				-0.2
10,399	+				-2.2
10,400	-				+0.2
10,400	-				+1.0
10,446	-				+0.5
10,454	-				-1.0
10,454	-				+0.3
10,466	+				-0.2
10,616	+				+0.4
10,617	-				-0.2
10,617	-				+0.7
10,663	+				-0.8
10,663	+				-0.7
10,664	-				+1.4
10,664	-				+1.8
10,664	-				-0.9
11,086	-		GFF6514	0.53	-0.1
11,134	-		GFF6514	0.59	-0.3
11,134	-		GFF6514	0.59	+0.2
11,134	-		GFF6514	0.59	+0.8
11,140	+		GFF6514	0.60	-0.9
11,140	+		GFF6514	0.60	-0.0
11,141	-		GFF6514	0.60	-1.9
11,244	+		GFF6514	0.72	-1.2
11,244	+		GFF6514	0.72	-0.4
11,332	-		GFF6514	0.83	+0.6
11,332	-		GFF6514	0.83	+0.1
11,332	-		GFF6514	0.83	-0.3