Strain Fitness in Variovorax sp. SCN45 around GFF6512

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
6,832	+				-0.6
6,832	+				-1.0
6,833	-				+1.2
6,919	+				+0.4
6,919	+				+1.0
6,919	+				+0.3
6,919	+				-0.5
6,920	-				-0.3
6,920	-				-2.0
6,920	-				-2.2
6,920	-				+2.2
6,920	-				+0.0
6,920	-				-0.8
6,965	-				-0.1
7,097	+		GFF6511	0.16	-0.1
7,097	+		GFF6511	0.16	+1.0
7,097	+		GFF6511	0.16	-0.7
7,098	-		GFF6511	0.16	+2.4
7,098	-		GFF6511	0.16	-0.2
7,098	-		GFF6511	0.16	+0.1
7,098	-		GFF6511	0.16	+0.1
7,205	+		GFF6511	0.31	+0.6
7,205	+		GFF6511	0.31	+0.4
7,205	+		GFF6511	0.31	+0.0
7,205	+		GFF6511	0.31	-0.2
7,205	+		GFF6511	0.31	-1.2
7,206	-		GFF6511	0.31	-0.4
7,206	-		GFF6511	0.31	-0.8
7,206	-		GFF6511	0.31	-0.5
7,226	+		GFF6511	0.33	+0.3
7,226	+		GFF6511	0.33	+0.6
7,226	+		GFF6511	0.33	-0.6
7,226	+		GFF6511	0.33	+2.0
7,227	-		GFF6511	0.34	-1.1
7,227	-		GFF6511	0.34	+0.5
7,966	+		GFF6512	0.40	-1.4
7,967	-		GFF6512	0.40	-1.9
7,967	-		GFF6512	0.40	-1.8
7,967	-		GFF6512	0.40	-0.2
8,370	+				+0.9
8,371	-				+0.8
8,769	+		GFF6513	0.14	-2.9
8,770	-		GFF6513	0.14	-2.3
9,122	+		GFF6513	0.33	-1.6
9,123	-		GFF6513	0.34	-2.1
9,317	-		GFF6513	0.44	-3.1
9,317	-		GFF6513	0.44	-1.6