Strain Fitness in Variovorax sp. SCN45 around GFF6400

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6399 and GFF6400 are separated by 40 nucleotidesGFF6400 and GFF6401 are separated by 11 nucleotides GFF6399 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain, at 73,425 to 74,477 GFF6399 GFF6400 - N-formylglutamate deformylase (EC 3.5.1.68), at 74,518 to 75,342 GFF6400 GFF6401 - Formiminoglutamic iminohydrolase (EC 3.5.3.13), at 75,354 to 76,736 GFF6401 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.666 kb on + strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.667 kb on - strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.702 kb on + strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.703 kb on - strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.876 kb on + strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.877 kb on - strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.981 kb on + strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.982 kb on - strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.984 kb on + strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 73.985 kb on - strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.185 kb on + strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.186 kb on - strand, within GFF6399at 74.254 kb on + strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.255 kb on - strand, within GFF6399at 74.356 kb on + strand, within GFF6399at 74.459 kb on + strandat 74.460 kb on - strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.477 kb on + strandat 74.477 kb on + strandat 74.478 kb on - strandat 74.478 kb on - strandat 74.490 kb on + strandat 74.490 kb on + strandat 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.694 kb on - strand, within GFF6400at 74.694 kb on - strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.744 kb on + strand, within GFF6400at 74.744 kb on + strand, within GFF6400at 74.951 kb on + strand, within GFF6400at 74.951 kb on + strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.021 kb on - strand, within GFF6400at 75.021 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.120 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.176 kb on + strand, within GFF6400at 75.176 kb on + strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.509 kb on + strand, within GFF6401at 75.509 kb on + strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.890 kb on - strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.339 kb on + strand, within GFF6401

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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73,666 + GFF6399 0.23 -0.2
73,666 + GFF6399 0.23 +1.4
73,666 + GFF6399 0.23 -0.2
73,666 + GFF6399 0.23 -0.4
73,666 + GFF6399 0.23 -0.4
73,666 + GFF6399 0.23 -0.6
73,666 + GFF6399 0.23 +0.4
73,666 + GFF6399 0.23 +0.4
73,666 + GFF6399 0.23 -0.1
73,666 + GFF6399 0.23 -2.2
73,666 + GFF6399 0.23 -0.5
73,666 + GFF6399 0.23 -1.5
73,666 + GFF6399 0.23 +0.2
73,666 + GFF6399 0.23 -0.7
73,666 + GFF6399 0.23 -2.3
73,666 + GFF6399 0.23 -1.6
73,666 + GFF6399 0.23 -0.1
73,666 + GFF6399 0.23 -0.8
73,666 + GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 +0.2
73,667 - GFF6399 0.23 +0.2
73,667 - GFF6399 0.23 -1.0
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 +1.6
73,667 - GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 +0.6
73,667 - GFF6399 0.23 -0.8
73,667 - GFF6399 0.23 +0.4
73,667 - GFF6399 0.23 -0.1
73,667 - GFF6399 0.23 -0.1
73,667 - GFF6399 0.23 -0.8
73,667 - GFF6399 0.23 +2.1
73,667 - GFF6399 0.23 -0.7
73,667 - GFF6399 0.23 +0.8
73,667 - GFF6399 0.23 -0.0
73,667 - GFF6399 0.23 -1.4
73,667 - GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 +0.4
73,667 - GFF6399 0.23 +0.4
73,667 - GFF6399 0.23 -0.3
73,667 - GFF6399 0.23 -0.5
73,667 - GFF6399 0.23 -0.4
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 -0.2
73,667 - GFF6399 0.23 +0.9
73,667 - GFF6399 0.23 -0.4
73,667 - GFF6399 0.23 -0.8
73,702 + GFF6399 0.26 -0.5
73,702 + GFF6399 0.26 -0.2
73,702 + GFF6399 0.26 -0.8
73,702 + GFF6399 0.26 -1.4
73,702 + GFF6399 0.26 -0.2
73,702 + GFF6399 0.26 -0.8
73,702 + GFF6399 0.26 +0.2
73,702 + GFF6399 0.26 +0.8
73,703 - GFF6399 0.26 +1.2
73,703 - GFF6399 0.26 -0.6
73,703 - GFF6399 0.26 -0.7
73,703 - GFF6399 0.26 -0.4
73,703 - GFF6399 0.26 -1.1
73,703 - GFF6399 0.26 +2.3
73,703 - GFF6399 0.26 +1.4
73,703 - GFF6399 0.26 +1.2
73,876 + GFF6399 0.43 +0.1
73,876 + GFF6399 0.43 -0.2
73,876 + GFF6399 0.43 -0.2
73,876 + GFF6399 0.43 -0.3
73,876 + GFF6399 0.43 +1.0
73,877 - GFF6399 0.43 +0.8
73,877 - GFF6399 0.43 -0.1
73,877 - GFF6399 0.43 -0.1
73,877 - GFF6399 0.43 -1.4
73,877 - GFF6399 0.43 +0.8
73,981 + GFF6399 0.53 -0.6
73,981 + GFF6399 0.53 +0.8
73,981 + GFF6399 0.53 -1.6
73,981 + GFF6399 0.53 -0.6
73,981 + GFF6399 0.53 -0.4
73,981 + GFF6399 0.53 -0.2
73,981 + GFF6399 0.53 +0.0
73,981 + GFF6399 0.53 -0.1
73,981 + GFF6399 0.53 -0.5
73,981 + GFF6399 0.53 -0.2
73,982 - GFF6399 0.53 +0.8
73,982 - GFF6399 0.53 -2.2
73,982 - GFF6399 0.53 +0.3
73,982 - GFF6399 0.53 +0.0
73,982 - GFF6399 0.53 -0.8
73,982 - GFF6399 0.53 +0.3
73,982 - GFF6399 0.53 -1.3
73,982 - GFF6399 0.53 +0.8
73,982 - GFF6399 0.53 +0.2
73,984 + GFF6399 0.53 +0.0
73,984 + GFF6399 0.53 +0.0
73,984 + GFF6399 0.53 +0.3
73,985 - GFF6399 0.53 +0.1
73,985 - GFF6399 0.53 +0.1
73,985 - GFF6399 0.53 +0.0
73,985 - GFF6399 0.53 +0.3
74,185 + GFF6399 0.72 -0.3
74,185 + GFF6399 0.72 +1.2
74,185 + GFF6399 0.72 -0.5
74,185 + GFF6399 0.72 +0.1
74,185 + GFF6399 0.72 -1.8
74,185 + GFF6399 0.72 +0.4
74,185 + GFF6399 0.72 -0.6
74,185 + GFF6399 0.72 +0.3
74,185 + GFF6399 0.72 +1.3
74,186 - GFF6399 0.72 -0.3
74,186 - GFF6399 0.72 -0.1
74,186 - GFF6399 0.72 -0.3
74,186 - GFF6399 0.72 +1.1
74,186 - GFF6399 0.72 -0.4
74,186 - GFF6399 0.72 -0.4
74,254 + GFF6399 0.79 -0.6
74,255 - GFF6399 0.79 -0.2
74,255 - GFF6399 0.79 -1.1
74,255 - GFF6399 0.79 -0.3
74,255 - GFF6399 0.79 +0.3
74,255 - GFF6399 0.79 -0.2
74,356 + GFF6399 0.88 -0.2
74,459 + -0.6
74,460 - +0.9
74,461 + -0.4
74,461 + +0.9
74,461 + -0.2
74,461 + -1.2
74,461 + +2.0
74,461 + +0.1
74,461 + +0.4
74,461 + -0.8
74,461 + +1.2
74,461 + +0.9
74,461 + -1.3
74,461 + -0.3
74,461 + -1.4
74,461 + +1.0
74,461 + +0.2
74,461 + -0.0
74,462 - -0.4
74,462 - +0.1
74,462 - -0.5
74,462 - +0.8
74,462 - -0.4
74,462 - -2.2
74,462 - +0.4
74,462 - -0.1
74,462 - +0.8
74,462 - -0.6
74,462 - -1.2
74,462 - +0.3
74,462 - +0.6
74,462 - -0.3
74,462 - -0.3
74,462 - -0.4
74,462 - -1.3
74,462 - -0.8
74,462 - +0.4
74,477 + -0.1
74,477 + +0.3
74,478 - +0.6
74,478 - +0.1
74,490 + +0.2
74,490 + -1.6
74,636 + GFF6400 0.14 +1.8
74,636 + GFF6400 0.14 +0.1
74,636 + GFF6400 0.14 -1.7
74,636 + GFF6400 0.14 -1.6
74,636 + GFF6400 0.14 +0.8
74,636 + GFF6400 0.14 +0.1
74,636 + GFF6400 0.14 -0.6
74,636 + GFF6400 0.14 -0.6
74,636 + GFF6400 0.14 -0.1
74,636 + GFF6400 0.14 -0.2
74,636 + GFF6400 0.14 -0.7
74,637 - GFF6400 0.14 -0.4
74,637 - GFF6400 0.14 -0.9
74,637 - GFF6400 0.14 +1.8
74,637 - GFF6400 0.14 +0.8
74,637 - GFF6400 0.14 -0.4
74,637 - GFF6400 0.14 +0.8
74,637 - GFF6400 0.14 +0.4
74,637 - GFF6400 0.14 +0.3
74,637 - GFF6400 0.14 +0.1
74,637 - GFF6400 0.14 -0.7
74,637 - GFF6400 0.14 -0.9
74,637 - GFF6400 0.14 -0.6
74,694 - GFF6400 0.21 -0.6
74,694 - GFF6400 0.21 +0.1
74,708 + GFF6400 0.23 -0.7
74,708 + GFF6400 0.23 -0.6
74,708 + GFF6400 0.23 -0.4
74,709 - GFF6400 0.23 -0.5
74,709 - GFF6400 0.23 +0.6
74,709 - GFF6400 0.23 -0.5
74,709 - GFF6400 0.23 +0.5
74,744 + GFF6400 0.27 -2.5
74,744 + GFF6400 0.27 -0.1
74,951 + GFF6400 0.52 +0.7
74,951 + GFF6400 0.52 -0.1
74,952 - GFF6400 0.53 +0.5
74,952 - GFF6400 0.53 -0.6
74,952 - GFF6400 0.53 +0.2
74,952 - GFF6400 0.53 +0.0
75,020 + GFF6400 0.61 -0.6
75,020 + GFF6400 0.61 +0.0
75,020 + GFF6400 0.61 -0.6
75,021 - GFF6400 0.61 -0.1
75,021 - GFF6400 0.61 +0.4
75,081 - GFF6400 0.68 -0.2
75,081 - GFF6400 0.68 -0.7
75,081 - GFF6400 0.68 +0.5
75,120 + GFF6400 0.73 -1.2
75,122 + GFF6400 0.73 -0.2
75,122 + GFF6400 0.73 +0.2
75,122 + GFF6400 0.73 -1.8
75,123 - GFF6400 0.73 -2.6
75,123 - GFF6400 0.73 -2.2
75,123 - GFF6400 0.73 -0.6
75,123 - GFF6400 0.73 -1.2
75,176 + GFF6400 0.80 +0.2
75,176 + GFF6400 0.80 -0.4
75,177 - GFF6400 0.80 -0.2
75,177 - GFF6400 0.80 -0.9
75,177 - GFF6400 0.80 -2.4
75,509 + GFF6401 0.11 -0.8
75,509 + GFF6401 0.11 -0.1
75,510 - GFF6401 0.11 -0.4
75,510 - GFF6401 0.11 -0.8
75,510 - GFF6401 0.11 -0.5
75,716 - GFF6401 0.26 -0.1
75,716 - GFF6401 0.26 +1.8
75,716 - GFF6401 0.26 -0.4
75,883 + GFF6401 0.38 +0.3
75,883 + GFF6401 0.38 -0.5
75,884 - GFF6401 0.38 +1.8
75,884 - GFF6401 0.38 -1.5
75,890 - GFF6401 0.39 -0.4
76,255 + GFF6401 0.65 -0.5
76,255 + GFF6401 0.65 -0.7
76,255 + GFF6401 0.65 -0.1
76,339 + GFF6401 0.71 +0.9

Or see this region's nucleotide sequence