Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6196 and GFF6197 overlap by 4 nucleotides GFF6197 and GFF6198 are separated by 39 nucleotides GFF6198 and GFF6199 are separated by 126 nucleotides GFF6199 and GFF6200 are separated by 56 nucleotides
GFF6196 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 102,934 to 103,815
GFF6196
GFF6197 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 103,812 to 104,762
GFF6197
GFF6198 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 104,802 to 105,884
GFF6198
GFF6199 - no description, at 106,011 to 106,178
GFF6199
GFF6200 - integral membrane sensor signal transduction histidine kinase, at 106,235 to 107,704
GFF6200
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.978 kb on + strand, within GFF6197 at 103.978 kb on + strand, within GFF6197 at 104.190 kb on + strand, within GFF6197 at 104.190 kb on + strand, within GFF6197 at 104.521 kb on + strand, within GFF6197 at 104.935 kb on + strand, within GFF6198 at 105.287 kb on - strand, within GFF6198 at 105.371 kb on - strand, within GFF6198 at 105.469 kb on + strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.580 kb on + strand, within GFF6198 at 105.581 kb on - strand, within GFF6198 at 105.581 kb on - strand, within GFF6198 at 105.670 kb on + strand, within GFF6198 at 105.670 kb on + strand, within GFF6198 at 105.671 kb on - strand, within GFF6198 at 105.671 kb on - strand, within GFF6198 at 105.736 kb on + strand, within GFF6198 at 105.736 kb on + strand, within GFF6198 at 105.737 kb on - strand, within GFF6198 at 105.737 kb on - strand, within GFF6198 at 105.767 kb on - strand, within GFF6198 at 105.767 kb on - strand, within GFF6198 at 105.955 kb on + strand at 106.041 kb on + strand, within GFF6199 at 106.180 kb on + strand at 106.181 kb on - strand at 106.422 kb on - strand, within GFF6200 at 106.422 kb on - strand, within GFF6200 at 106.454 kb on + strand, within GFF6200 at 106.631 kb on + strand, within GFF6200 at 106.631 kb on + strand, within GFF6200 at 106.787 kb on + strand, within GFF6200 at 106.788 kb on - strand, within GFF6200 at 106.811 kb on + strand, within GFF6200 at 106.811 kb on + strand, within GFF6200 at 106.811 kb on + strand, within GFF6200 at 106.811 kb on + strand, within GFF6200 at 106.812 kb on - strand, within GFF6200 at 106.814 kb on + strand, within GFF6200 at 106.814 kb on + strand, within GFF6200 at 106.814 kb on + strand, within GFF6200 at 106.814 kb on + strand, within GFF6200 at 106.815 kb on - strand, within GFF6200 at 106.815 kb on - strand, within GFF6200 at 106.815 kb on - strand, within GFF6200 at 106.815 kb on - strand, within GFF6200
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 103,816 - -0.5 103,816 - +0.6 103,816 - +0.3 103,816 - -0.2 103,978 + GFF6197 0.17 -0.7 103,978 + GFF6197 0.17 +0.2 104,190 + GFF6197 0.40 +0.4 104,190 + GFF6197 0.40 +0.5 104,521 + GFF6197 0.75 +0.8 104,935 + GFF6198 0.12 +0.5 105,287 - GFF6198 0.45 -0.3 105,371 - GFF6198 0.53 +0.3 105,469 + GFF6198 0.62 +1.4 105,470 - GFF6198 0.62 +1.9 105,470 - GFF6198 0.62 +0.9 105,470 - GFF6198 0.62 +0.9 105,580 + GFF6198 0.72 +0.4 105,581 - GFF6198 0.72 -0.7 105,581 - GFF6198 0.72 -0.3 105,670 + GFF6198 0.80 -0.2 105,670 + GFF6198 0.80 +0.2 105,671 - GFF6198 0.80 +0.6 105,671 - GFF6198 0.80 +0.1 105,736 + GFF6198 0.86 +0.8 105,736 + GFF6198 0.86 +2.4 105,737 - GFF6198 0.86 +1.1 105,737 - GFF6198 0.86 +0.6 105,767 - GFF6198 0.89 +0.6 105,767 - GFF6198 0.89 +1.5 105,955 + +0.0 106,041 + GFF6199 0.18 -0.6 106,180 + -1.3 106,181 - -0.3 106,422 - GFF6200 0.13 -0.9 106,422 - GFF6200 0.13 -0.3 106,454 + GFF6200 0.15 +0.0 106,631 + GFF6200 0.27 -0.9 106,631 + GFF6200 0.27 +0.3 106,787 + GFF6200 0.38 +0.1 106,788 - GFF6200 0.38 -1.9 106,811 + GFF6200 0.39 -0.5 106,811 + GFF6200 0.39 -0.2 106,811 + GFF6200 0.39 +0.4 106,811 + GFF6200 0.39 -0.1 106,812 - GFF6200 0.39 +0.7 106,814 + GFF6200 0.39 -0.6 106,814 + GFF6200 0.39 -0.8 106,814 + GFF6200 0.39 +1.1 106,814 + GFF6200 0.39 -0.7 106,815 - GFF6200 0.39 -0.5 106,815 - GFF6200 0.39 -1.6 106,815 - GFF6200 0.39 -0.6 106,815 - GFF6200 0.39 -1.0
Or see this region's nucleotide sequence