Strain Fitness in Variovorax sp. SCN45 around GFF6174

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
78,778	+		GFF6173	0.69	+0.4
78,952	+		GFF6173	0.75	+0.4
78,953	-		GFF6173	0.75	-0.9
78,953	-		GFF6173	0.75	-1.3
78,953	-		GFF6173	0.75	-0.2
79,041	+		GFF6173	0.78	-0.6
79,041	+		GFF6173	0.78	+0.4
79,042	-		GFF6173	0.78	+1.2
79,042	-		GFF6173	0.78	+0.6
79,235	-		GFF6173	0.85	-0.3
79,384	+		GFF6173	0.90	-0.2
79,384	+		GFF6173	0.90	-0.7
79,384	+		GFF6173	0.90	+0.4
79,384	+		GFF6173	0.90	+1.0
79,384	+		GFF6173	0.90	-0.7
79,384	+		GFF6173	0.90	+0.3
79,384	+		GFF6173	0.90	-0.7
79,384	+		GFF6173	0.90	+0.4
79,384	+		GFF6173	0.90	-0.4
79,384	+		GFF6173	0.90	-1.3
79,384	+		GFF6173	0.90	-0.4
79,384	+		GFF6173	0.90	-0.2
79,384	+		GFF6173	0.90	-0.6
79,384	+		GFF6173	0.90	+0.2
79,384	+		GFF6173	0.90	-0.7
79,384	+		GFF6173	0.90	-0.1
79,384	+		GFF6173	0.90	-0.2
79,384	+		GFF6173	0.90	+1.4
79,384	+		GFF6173	0.90	+0.3
79,384	+		GFF6173	0.90	-0.5
79,384	+		GFF6173	0.90	-1.2
79,384	+		GFF6173	0.90	-0.6
79,384	+		GFF6173	0.90	-0.2
79,384	+		GFF6173	0.90	-0.0
79,385	-				-1.2
79,385	-				+0.3
79,385	-				-0.2
79,385	-				+0.5
79,385	-				+0.3
79,385	-				-1.1
79,385	-				-0.6
79,385	-				-0.3
79,385	-				+0.1
79,385	-				+1.2
79,385	-				-0.2
79,385	-				-0.8
79,385	-				-0.3
79,385	-				+0.1
79,385	-				-0.1
79,385	-				+1.7
79,385	-				+0.0
79,385	-				+0.1
79,385	-				+0.4
79,385	-				-0.5
79,385	-				+0.1
79,385	-				-0.6
79,385	-				+0.5
79,387	+				-0.2
79,387	+				+1.2
79,387	+				+0.4
79,387	+				+1.4
79,387	+				+0.2
79,388	-				+0.1
79,396	+				+0.4
79,396	+				+0.6
79,396	+				+0.2
79,396	+				-0.0
79,396	+				-0.3
79,397	-				+0.0
79,397	-				+0.3
79,397	-				+0.0
79,397	-				+0.3
79,397	-				+0.4
79,705	+				+0.1
79,705	+				+0.1
79,706	-				-0.7
79,717	+				+1.3
79,717	+				-1.2
79,718	-				-1.3
79,718	-				-2.0
79,721	+				-0.4
79,722	-				-0.9
79,722	-				+0.9
79,736	+				-0.3
79,737	-				+0.1
79,737	-				+0.3
79,737	-				-0.3
79,737	-				-0.7
79,737	-				-1.0
80,001	-		GFF6174	0.65	-0.5
80,001	-		GFF6174	0.65	-3.3
80,378	+		GFF6175	0.50	-0.1
80,535	+				-0.7
80,535	+				+0.0
80,536	-				+0.2
80,536	-				-0.9
80,536	-				-0.1
80,536	-				-1.4
80,536	-				-0.2
80,540	-				+0.5
80,656	+				-0.6
80,656	+				-0.0
80,656	+				+0.8
80,656	+				-1.5
80,656	+				-0.5
80,656	+				-0.3
80,657	-				-0.2
80,657	-				+0.3
80,657	-				-0.2
80,657	-				-0.7