Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6111 and GFF6112 overlap by 4 nucleotides GFF6112 and GFF6113 are separated by 10 nucleotides GFF6113 and GFF6114 are separated by 19 nucleotides
GFF6111 - Oligopeptide ABC transporter, ATP-binding protein OppF (TC 3.A.1.5.1), at 10,167 to 11,165
GFF6111
GFF6112 - Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1), at 11,162 to 12,193
GFF6112
GFF6113 - Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2), at 12,204 to 13,106
GFF6113
GFF6114 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 13,126 to 14,061
GFF6114
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.394 kb on - strand, within GFF6111 at 10.394 kb on - strand, within GFF6111 at 10.456 kb on + strand, within GFF6111 at 10.456 kb on + strand, within GFF6111 at 10.457 kb on - strand, within GFF6111 at 10.457 kb on - strand, within GFF6111 at 10.520 kb on - strand, within GFF6111 at 10.846 kb on + strand, within GFF6111 at 10.969 kb on - strand, within GFF6111 at 11.110 kb on + strand at 11.111 kb on - strand at 11.111 kb on - strand at 11.111 kb on - strand at 11.346 kb on - strand, within GFF6112 at 11.409 kb on + strand, within GFF6112 at 11.409 kb on + strand, within GFF6112 at 11.410 kb on - strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.472 kb on + strand, within GFF6112 at 11.473 kb on - strand, within GFF6112 at 11.473 kb on - strand, within GFF6112 at 11.473 kb on - strand, within GFF6112 at 11.473 kb on - strand, within GFF6112 at 11.706 kb on + strand, within GFF6112 at 11.807 kb on + strand, within GFF6112 at 11.807 kb on + strand, within GFF6112 at 12.073 kb on - strand, within GFF6112 at 12.302 kb on - strand, within GFF6113 at 13.131 kb on - strand at 13.131 kb on - strand at 13.191 kb on - strand at 13.191 kb on - strand at 13.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 10,394 - GFF6111 0.23 +1.3 10,394 - GFF6111 0.23 +0.1 10,456 + GFF6111 0.29 -1.6 10,456 + GFF6111 0.29 -0.7 10,457 - GFF6111 0.29 -0.0 10,457 - GFF6111 0.29 -1.0 10,520 - GFF6111 0.35 +0.8 10,846 + GFF6111 0.68 -0.3 10,969 - GFF6111 0.80 -1.2 11,110 + -1.0 11,111 - -2.5 11,111 - +0.0 11,111 - -0.2 11,346 - GFF6112 0.18 +0.4 11,409 + GFF6112 0.24 -0.0 11,409 + GFF6112 0.24 +1.0 11,410 - GFF6112 0.24 +0.1 11,472 + GFF6112 0.30 +0.3 11,472 + GFF6112 0.30 -0.3 11,472 + GFF6112 0.30 -0.8 11,472 + GFF6112 0.30 -0.2 11,472 + GFF6112 0.30 -0.1 11,472 + GFF6112 0.30 +1.0 11,472 + GFF6112 0.30 -0.4 11,473 - GFF6112 0.30 -0.3 11,473 - GFF6112 0.30 -0.2 11,473 - GFF6112 0.30 +1.3 11,473 - GFF6112 0.30 -0.9 11,706 + GFF6112 0.53 +1.9 11,807 + GFF6112 0.62 +0.1 11,807 + GFF6112 0.62 +0.6 12,073 - GFF6112 0.88 -1.0 12,302 - GFF6113 0.11 -0.8 13,131 - -0.3 13,131 - +0.1 13,191 - -1.0 13,191 - +0.4 13,191 - -1.5
Or see this region's nucleotide sequence