Strain Fitness in Variovorax sp. SCN45 around GFF6051

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6050 and GFF6051 are separated by 13 nucleotidesGFF6051 and GFF6052 overlap by 4 nucleotidesGFF6052 and GFF6053 are separated by 166 nucleotides GFF6050 - bll0558; unknown protein, at 110,233 to 111,600 GFF6050 GFF6051 - Enoyl-CoA hydratase (EC 4.2.1.17), at 111,614 to 112,408 GFF6051 GFF6052 - HNH endonuclease family protein, at 112,405 to 112,965 GFF6052 GFF6053 - FMN adenylyltransferase (EC 2.7.7.2) / Riboflavin kinase (EC 2.7.1.26), at 113,132 to 114,169 GFF6053 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1at 110.626 kb on + strand, within GFF6050at 110.626 kb on + strand, within GFF6050at 110.626 kb on + strand, within GFF6050at 110.626 kb on + strand, within GFF6050at 110.626 kb on + strand, within GFF6050at 110.626 kb on + strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.627 kb on - strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.845 kb on + strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 110.846 kb on - strand, within GFF6050at 111.146 kb on + strand, within GFF6050at 111.147 kb on - strand, within GFF6050at 111.229 kb on + strand, within GFF6050at 111.230 kb on - strand, within GFF6050at 111.257 kb on - strand, within GFF6050at 111.257 kb on - strand, within GFF6050at 111.257 kb on - strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.274 kb on + strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.275 kb on - strand, within GFF6050at 111.386 kb on - strand, within GFF6050at 111.753 kb on + strand, within GFF6051at 111.753 kb on + strand, within GFF6051at 111.754 kb on - strand, within GFF6051at 111.754 kb on - strand, within GFF6051at 111.754 kb on - strand, within GFF6051at 111.754 kb on - strand, within GFF6051at 111.754 kb on - strand, within GFF6051at 111.858 kb on - strand, within GFF6051at 111.858 kb on - strand, within GFF6051at 111.860 kb on + strand, within GFF6051at 111.860 kb on + strand, within GFF6051at 111.860 kb on + strand, within GFF6051at 111.861 kb on - strand, within GFF6051at 111.861 kb on - strand, within GFF6051at 111.978 kb on + strand, within GFF6051at 111.978 kb on + strand, within GFF6051at 111.978 kb on + strand, within GFF6051at 111.979 kb on - strand, within GFF6051at 111.979 kb on - strand, within GFF6051at 111.979 kb on - strand, within GFF6051at 111.979 kb on - strand, within GFF6051at 112.266 kb on - strand, within GFF6051at 112.406 kb on + strandat 112.406 kb on + strandat 112.406 kb on + strandat 112.406 kb on + strandat 112.406 kb on + strandat 112.406 kb on + strandat 112.406 kb on + strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.517 kb on + strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.518 kb on - strand, within GFF6052at 112.526 kb on + strand, within GFF6052at 112.526 kb on + strand, within GFF6052at 112.526 kb on + strand, within GFF6052at 112.526 kb on + strand, within GFF6052at 112.527 kb on - strand, within GFF6052at 112.587 kb on + strand, within GFF6052at 112.587 kb on + strand, within GFF6052at 112.587 kb on + strand, within GFF6052at 112.587 kb on + strand, within GFF6052at 112.587 kb on + strand, within GFF6052at 112.588 kb on - strand, within GFF6052at 112.588 kb on - strand, within GFF6052at 112.688 kb on + strand, within GFF6052at 112.688 kb on + strand, within GFF6052at 112.689 kb on - strand, within GFF6052at 112.892 kb on + strand, within GFF6052at 112.893 kb on - strand, within GFF6052at 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.056 kb on + strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.057 kb on - strandat 113.058 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
110,626 + GFF6050 0.29 -0.8
110,626 + GFF6050 0.29 +0.4
110,626 + GFF6050 0.29 -1.9
110,626 + GFF6050 0.29 +1.2
110,626 + GFF6050 0.29 -1.0
110,626 + GFF6050 0.29 +0.1
110,627 - GFF6050 0.29 +0.4
110,627 - GFF6050 0.29 -0.0
110,627 - GFF6050 0.29 -1.6
110,627 - GFF6050 0.29 +0.3
110,627 - GFF6050 0.29 -0.6
110,627 - GFF6050 0.29 +0.5
110,627 - GFF6050 0.29 -2.0
110,845 + GFF6050 0.45 -0.8
110,845 + GFF6050 0.45 -1.0
110,845 + GFF6050 0.45 -0.2
110,845 + GFF6050 0.45 -0.1
110,845 + GFF6050 0.45 -0.4
110,845 + GFF6050 0.45 +1.0
110,845 + GFF6050 0.45 +0.9
110,845 + GFF6050 0.45 -0.1
110,846 - GFF6050 0.45 -0.5
110,846 - GFF6050 0.45 +0.1
110,846 - GFF6050 0.45 -0.0
110,846 - GFF6050 0.45 +0.3
110,846 - GFF6050 0.45 -0.3
110,846 - GFF6050 0.45 -0.0
111,146 + GFF6050 0.67 +0.1
111,147 - GFF6050 0.67 -0.0
111,229 + GFF6050 0.73 -0.7
111,230 - GFF6050 0.73 -1.5
111,257 - GFF6050 0.75 -0.4
111,257 - GFF6050 0.75 -1.2
111,257 - GFF6050 0.75 -0.1
111,274 + GFF6050 0.76 -0.4
111,274 + GFF6050 0.76 +1.6
111,274 + GFF6050 0.76 +0.2
111,274 + GFF6050 0.76 -1.8
111,274 + GFF6050 0.76 -0.3
111,274 + GFF6050 0.76 -0.7
111,275 - GFF6050 0.76 +0.2
111,275 - GFF6050 0.76 -2.2
111,275 - GFF6050 0.76 -0.6
111,275 - GFF6050 0.76 +0.2
111,275 - GFF6050 0.76 -0.3
111,275 - GFF6050 0.76 -0.6
111,275 - GFF6050 0.76 +0.3
111,386 - GFF6050 0.84 +0.6
111,753 + GFF6051 0.17 +0.2
111,753 + GFF6051 0.17 -0.4
111,754 - GFF6051 0.18 +0.3
111,754 - GFF6051 0.18 -0.0
111,754 - GFF6051 0.18 +0.3
111,754 - GFF6051 0.18 +0.8
111,754 - GFF6051 0.18 -1.3
111,858 - GFF6051 0.31 -0.3
111,858 - GFF6051 0.31 -0.5
111,860 + GFF6051 0.31 -0.0
111,860 + GFF6051 0.31 -0.0
111,860 + GFF6051 0.31 +1.3
111,861 - GFF6051 0.31 -0.6
111,861 - GFF6051 0.31 -0.4
111,978 + GFF6051 0.46 +0.1
111,978 + GFF6051 0.46 -0.2
111,978 + GFF6051 0.46 +0.9
111,979 - GFF6051 0.46 -0.8
111,979 - GFF6051 0.46 -0.0
111,979 - GFF6051 0.46 +0.2
111,979 - GFF6051 0.46 +0.2
112,266 - GFF6051 0.82 -0.6
112,406 + -0.6
112,406 + -0.1
112,406 + +0.1
112,406 + +0.6
112,406 + -1.9
112,406 + -0.4
112,406 + -0.2
112,407 - +1.1
112,407 - +0.3
112,407 - -0.5
112,407 - -0.3
112,407 - -0.3
112,407 - -0.9
112,407 - -0.8
112,407 - -0.9
112,407 - -0.2
112,407 - -1.3
112,407 - -0.3
112,517 + GFF6052 0.20 -0.4
112,517 + GFF6052 0.20 +0.7
112,517 + GFF6052 0.20 -0.2
112,517 + GFF6052 0.20 -0.5
112,517 + GFF6052 0.20 +0.7
112,517 + GFF6052 0.20 +0.0
112,517 + GFF6052 0.20 -0.6
112,517 + GFF6052 0.20 +0.6
112,517 + GFF6052 0.20 +0.3
112,517 + GFF6052 0.20 -0.3
112,517 + GFF6052 0.20 -0.2
112,517 + GFF6052 0.20 -0.8
112,518 - GFF6052 0.20 -0.8
112,518 - GFF6052 0.20 -0.8
112,518 - GFF6052 0.20 -0.3
112,518 - GFF6052 0.20 +0.3
112,518 - GFF6052 0.20 -1.5
112,518 - GFF6052 0.20 -0.5
112,518 - GFF6052 0.20 -0.1
112,526 + GFF6052 0.22 +0.2
112,526 + GFF6052 0.22 +1.4
112,526 + GFF6052 0.22 -0.0
112,526 + GFF6052 0.22 +0.4
112,527 - GFF6052 0.22 -1.8
112,587 + GFF6052 0.32 +0.0
112,587 + GFF6052 0.32 -0.8
112,587 + GFF6052 0.32 +0.3
112,587 + GFF6052 0.32 -0.3
112,587 + GFF6052 0.32 -2.0
112,588 - GFF6052 0.33 -0.8
112,588 - GFF6052 0.33 -0.6
112,688 + GFF6052 0.50 -0.2
112,688 + GFF6052 0.50 -0.3
112,689 - GFF6052 0.51 +0.6
112,892 + GFF6052 0.87 -1.2
112,893 - GFF6052 0.87 +0.0
113,056 + -0.6
113,056 + -0.4
113,056 + +0.1
113,056 + -0.7
113,056 + -0.2
113,056 + -0.9
113,056 + -0.1
113,056 + -0.4
113,056 + -0.5
113,057 - +0.1
113,057 - -0.2
113,057 - -0.1
113,057 - +0.2
113,057 - -1.4
113,057 - -2.1
113,057 - +0.2
113,057 - -0.2
113,057 - +0.4
113,058 + -0.5

Or see this region's nucleotide sequence