Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5950 and GFF5951 are separated by 1 nucleotides GFF5951 and GFF5952 are separated by 60 nucleotides GFF5952 and GFF5953 are separated by 141 nucleotides
GFF5950 - no description, at 7,204 to 7,797
GFF5950
GFF5951 - no description, at 7,799 to 8,236
GFF5951
GFF5952 - no description, at 8,297 to 8,665
GFF5952
GFF5953 - Class D beta-lactamase (EC 3.5.2.6), at 8,807 to 9,673
GFF5953
Position (kb) 8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7.358 kb on - strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.613 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.730 kb on - strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.741 kb on + strand at 7.741 kb on + strand at 7.741 kb on + strand at 7.742 kb on - strand at 7.762 kb on + strand at 7.762 kb on + strand at 7.763 kb on - strand at 7.976 kb on + strand, within GFF5951 at 7.976 kb on + strand, within GFF5951 at 7.985 kb on + strand, within GFF5951 at 7.986 kb on - strand, within GFF5951 at 7.986 kb on - strand, within GFF5951 at 8.066 kb on + strand, within GFF5951 at 8.066 kb on + strand, within GFF5951 at 8.067 kb on - strand, within GFF5951 at 8.067 kb on - strand, within GFF5951 at 8.115 kb on - strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.145 kb on - strand, within GFF5951 at 8.157 kb on - strand, within GFF5951 at 8.157 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.372 kb on + strand, within GFF5952 at 9.074 kb on + strand, within GFF5953 at 9.227 kb on + strand, within GFF5953 at 9.228 kb on - strand, within GFF5953 at 9.290 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.498 kb on - strand, within GFF5953
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 7,358 - GFF5950 0.26 -0.2 7,456 + GFF5950 0.42 -1.2 7,456 + GFF5950 0.42 -0.4 7,456 + GFF5950 0.42 -1.9 7,456 + GFF5950 0.42 -1.0 7,457 - GFF5950 0.43 -1.8 7,457 - GFF5950 0.43 +1.0 7,457 - GFF5950 0.43 +0.6 7,528 + GFF5950 0.55 +2.6 7,528 + GFF5950 0.55 -0.1 7,529 - GFF5950 0.55 -0.6 7,529 - GFF5950 0.55 +0.6 7,612 + GFF5950 0.69 +0.4 7,612 + GFF5950 0.69 -1.1 7,613 - GFF5950 0.69 +0.2 7,718 - GFF5950 0.87 -2.1 7,718 - GFF5950 0.87 +0.2 7,730 - GFF5950 0.89 -0.4 7,735 + GFF5950 0.89 -0.4 7,735 + GFF5950 0.89 -0.4 7,736 - GFF5950 0.90 -0.7 7,736 - GFF5950 0.90 +0.5 7,736 - GFF5950 0.90 +0.6 7,736 - GFF5950 0.90 -0.4 7,741 + -0.1 7,741 + -0.8 7,741 + -0.3 7,742 - +0.0 7,762 + -0.1 7,762 + +0.1 7,763 - -2.0 7,976 + GFF5951 0.40 -0.2 7,976 + GFF5951 0.40 -0.0 7,985 + GFF5951 0.42 +0.1 7,986 - GFF5951 0.43 +0.9 7,986 - GFF5951 0.43 -1.1 8,066 + GFF5951 0.61 +0.9 8,066 + GFF5951 0.61 -1.0 8,067 - GFF5951 0.61 +0.2 8,067 - GFF5951 0.61 +0.2 8,115 - GFF5951 0.72 -0.5 8,144 + GFF5951 0.79 -0.4 8,144 + GFF5951 0.79 +0.1 8,144 + GFF5951 0.79 -0.4 8,144 + GFF5951 0.79 -0.4 8,145 - GFF5951 0.79 +1.9 8,157 - GFF5951 0.82 -0.3 8,157 - GFF5951 0.82 -0.4 8,184 - GFF5951 0.88 -0.7 8,184 - GFF5951 0.88 +0.0 8,184 - GFF5951 0.88 +0.4 8,184 - GFF5951 0.88 -0.1 8,184 - GFF5951 0.88 -0.3 8,184 - GFF5951 0.88 -1.3 8,372 + GFF5952 0.20 +0.4 9,074 + GFF5953 0.31 +1.6 9,227 + GFF5953 0.48 -0.2 9,228 - GFF5953 0.49 -1.1 9,290 + GFF5953 0.56 +1.1 9,494 + GFF5953 0.79 +0.5 9,494 + GFF5953 0.79 +0.1 9,494 + GFF5953 0.79 -0.2 9,497 + GFF5953 0.80 -2.1 9,497 + GFF5953 0.80 +1.2 9,497 + GFF5953 0.80 -1.2 9,497 + GFF5953 0.80 +0.4 9,497 + GFF5953 0.80 -1.2 9,498 - GFF5953 0.80 -1.9
Or see this region's nucleotide sequence