Strain Fitness in Variovorax sp. SCN45 around GFF5929

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
143,620	-		GFF5928	0.35	+0.8
143,620	-		GFF5928	0.35	-0.6
143,679	+		GFF5928	0.40	-0.2
143,679	+		GFF5928	0.40	+0.0
143,745	+		GFF5928	0.46	-0.1
143,745	+		GFF5928	0.46	+0.5
143,745	+		GFF5928	0.46	-1.8
143,745	+		GFF5928	0.46	-0.4
143,746	-		GFF5928	0.46	+1.0
143,749	+		GFF5928	0.46	-0.1
143,865	+		GFF5928	0.57	-0.4
143,865	+		GFF5928	0.57	+1.7
143,865	+		GFF5928	0.57	-0.1
143,865	+		GFF5928	0.57	-1.1
143,866	-		GFF5928	0.57	-1.2
143,866	-		GFF5928	0.57	-0.2
143,866	-		GFF5928	0.57	+1.1
143,866	-		GFF5928	0.57	-0.7
143,926	-		GFF5928	0.62	-1.3
144,022	-		GFF5928	0.71	-0.4
144,132	+		GFF5928	0.81	-0.1
144,132	+		GFF5928	0.81	+0.7
144,132	+		GFF5928	0.81	-0.5
144,132	+		GFF5928	0.81	-0.7
144,133	-		GFF5928	0.81	+0.9
144,133	-		GFF5928	0.81	+1.2
144,133	-		GFF5928	0.81	+0.1
144,433	+		GFF5929	0.13	-2.1
144,433	+		GFF5929	0.13	-0.1
144,434	-		GFF5929	0.13	-1.0
144,860	+				-0.9
144,860	+				-1.6
144,861	-				+0.3
145,310	+		GFF5930	0.18	+0.7
145,311	-		GFF5930	0.18	-0.7
145,627	+		GFF5930	0.32	-0.3
145,627	+		GFF5930	0.32	-0.5
145,759	+		GFF5930	0.37	-0.2
145,844	-		GFF5930	0.41	-0.3