Strain Fitness in Variovorax sp. SCN45 around GFF5703

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
75,938	+				+0.3
75,938	+				-0.7
75,938	+				-1.0
75,938	+				+1.1
75,938	+				-1.0
75,938	+				-0.6
75,939	-				-0.7
75,939	-				+0.6
75,939	-				+0.5
75,939	-				+0.2
75,939	-				+0.5
75,939	-				+0.3
76,941	+				-0.2
76,942	-				-0.7
76,945	+				-0.7
76,945	+				-1.7
76,945	+				-0.4
76,945	+				-1.2
77,306	+		GFF5703	0.42	+0.1
77,306	+		GFF5703	0.42	-0.9
77,306	+		GFF5703	0.42	-1.0
77,306	+		GFF5703	0.42	+0.1
77,306	+		GFF5703	0.42	-0.7
77,307	-		GFF5703	0.42	-0.0
77,372	+		GFF5703	0.48	-1.9
77,372	+		GFF5703	0.48	-1.2
77,373	-		GFF5703	0.49	-0.6
77,373	-		GFF5703	0.49	-0.4
77,373	-		GFF5703	0.49	-0.5
77,373	-		GFF5703	0.49	-0.5
77,373	-		GFF5703	0.49	-0.6
77,795	+				+0.5
77,795	+				-0.9
77,795	+				+0.4
77,795	+				-0.4
77,795	+				-0.6
77,795	+				-1.9
77,796	-				-0.5
77,796	-				+0.7
77,796	-				-1.1
77,796	-				-0.5
77,796	-				-1.4
77,796	-				-0.3
77,796	-				+0.7
77,796	-				+0.3
77,881	+				-0.7