Strain Fitness in Variovorax sp. SCN45 around GFF5605

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5604 and GFF5605 are separated by 1 nucleotidesGFF5605 and GFF5606 are separated by 1 nucleotides GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075 GFF5604 GFF5605 - D-xylose ABC transporter, ATP-binding protein XylG, at 224,077 to 224,874 GFF5605 GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039 GFF5606 Position (kb) 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.158 kb on + strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.159 kb on - strand, within GFF5604at 223.227 kb on + strand, within GFF5604at 223.227 kb on + strand, within GFF5604at 223.227 kb on + strand, within GFF5604at 223.228 kb on - strand, within GFF5604at 223.572 kb on + strand, within GFF5604at 223.572 kb on + strand, within GFF5604at 223.573 kb on - strand, within GFF5604at 223.573 kb on - strand, within GFF5604at 223.683 kb on + strand, within GFF5604at 223.683 kb on + strand, within GFF5604at 223.683 kb on + strand, within GFF5604at 223.683 kb on + strand, within GFF5604at 223.684 kb on - strand, within GFF5604at 223.684 kb on - strand, within GFF5604at 223.684 kb on - strand, within GFF5604at 223.684 kb on - strand, within GFF5604at 223.684 kb on - strand, within GFF5604at 223.857 kb on + strand, within GFF5604at 223.857 kb on + strand, within GFF5604at 223.857 kb on + strand, within GFF5604at 223.857 kb on + strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 223.858 kb on - strand, within GFF5604at 224.049 kb on + strandat 224.179 kb on + strand, within GFF5605at 224.180 kb on - strand, within GFF5605at 224.350 kb on + strand, within GFF5605at 224.351 kb on - strand, within GFF5605at 224.351 kb on - strand, within GFF5605at 224.351 kb on - strand, within GFF5605at 224.569 kb on + strand, within GFF5605at 224.569 kb on + strand, within GFF5605at 224.570 kb on - strand, within GFF5605at 224.570 kb on - strand, within GFF5605at 224.767 kb on + strand, within GFF5605at 224.768 kb on - strand, within GFF5605at 225.194 kb on + strand, within GFF5606at 225.492 kb on - strand, within GFF5606at 225.492 kb on - strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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223,158 + GFF5604 0.23 -3.0
223,158 + GFF5604 0.23 -1.8
223,158 + GFF5604 0.23 -1.5
223,158 + GFF5604 0.23 -2.8
223,158 + GFF5604 0.23 -1.0
223,158 + GFF5604 0.23 -1.2
223,158 + GFF5604 0.23 +1.0
223,159 - GFF5604 0.23 -0.9
223,159 - GFF5604 0.23 -0.9
223,159 - GFF5604 0.23 -2.1
223,159 - GFF5604 0.23 -1.9
223,159 - GFF5604 0.23 -2.2
223,159 - GFF5604 0.23 -0.4
223,227 + GFF5604 0.29 -2.0
223,227 + GFF5604 0.29 -1.4
223,227 + GFF5604 0.29 -1.2
223,228 - GFF5604 0.29 -0.8
223,572 + GFF5604 0.58 -1.7
223,572 + GFF5604 0.58 -0.7
223,573 - GFF5604 0.58 -1.9
223,573 - GFF5604 0.58 -3.4
223,683 + GFF5604 0.67 -2.0
223,683 + GFF5604 0.67 -0.2
223,683 + GFF5604 0.67 -0.5
223,683 + GFF5604 0.67 -0.6
223,684 - GFF5604 0.67 -2.0
223,684 - GFF5604 0.67 -1.0
223,684 - GFF5604 0.67 +0.1
223,684 - GFF5604 0.67 -0.2
223,684 - GFF5604 0.67 +0.6
223,857 + GFF5604 0.82 -1.7
223,857 + GFF5604 0.82 -1.9
223,857 + GFF5604 0.82 +0.2
223,857 + GFF5604 0.82 -2.4
223,858 - GFF5604 0.82 -1.4
223,858 - GFF5604 0.82 -1.8
223,858 - GFF5604 0.82 -2.2
223,858 - GFF5604 0.82 -3.4
223,858 - GFF5604 0.82 -1.5
223,858 - GFF5604 0.82 -2.3
224,049 + -1.8
224,179 + GFF5605 0.13 -1.7
224,180 - GFF5605 0.13 -2.0
224,350 + GFF5605 0.34 +0.4
224,351 - GFF5605 0.34 +0.3
224,351 - GFF5605 0.34 -0.8
224,351 - GFF5605 0.34 -0.9
224,569 + GFF5605 0.62 -1.7
224,569 + GFF5605 0.62 -0.9
224,570 - GFF5605 0.62 -0.8
224,570 - GFF5605 0.62 -1.6
224,767 + GFF5605 0.86 +0.8
224,768 - GFF5605 0.87 -0.6
225,194 + GFF5606 0.27 -0.6
225,492 - GFF5606 0.53 +0.2
225,492 - GFF5606 0.53 -0.1
225,645 + GFF5606 0.66 +0.5
225,645 + GFF5606 0.66 -0.0
225,645 + GFF5606 0.66 +1.2
225,645 + GFF5606 0.66 +0.2

Or see this region's nucleotide sequence