Strain Fitness in Variovorax sp. SCN45 around GFF5481

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
109,066	+		GFF5479	0.35	+0.1
109,066	+		GFF5479	0.35	+0.5
109,066	+		GFF5479	0.35	-0.3
109,066	+		GFF5479	0.35	-0.1
109,067	-		GFF5479	0.36	+0.2
109,067	-		GFF5479	0.36	-0.5
109,067	-		GFF5479	0.36	-0.1
109,067	-		GFF5479	0.36	+0.7
109,067	-		GFF5479	0.36	-0.2
109,186	+		GFF5479	0.57	+0.1
109,187	-		GFF5479	0.58	+0.7
109,187	-		GFF5479	0.58	+0.5
109,187	-		GFF5479	0.58	+0.3
109,187	-		GFF5479	0.58	-0.2
109,187	-		GFF5479	0.58	-1.4
109,279	+		GFF5479	0.75	-0.7
109,279	+		GFF5479	0.75	-0.6
109,279	+		GFF5479	0.75	-0.3
109,279	+		GFF5479	0.75	-0.2
109,279	+		GFF5479	0.75	-1.4
109,279	+		GFF5479	0.75	-0.3
109,279	+		GFF5479	0.75	-0.8
109,279	+		GFF5479	0.75	+0.3
109,280	-		GFF5479	0.75	-0.4
109,280	-		GFF5479	0.75	-1.8
109,280	-		GFF5479	0.75	-0.2
109,280	-		GFF5479	0.75	-0.4
109,280	-		GFF5479	0.75	-0.0
109,755	+		GFF5480	0.83	-0.1
109,755	+		GFF5480	0.83	-0.7
109,755	+		GFF5480	0.83	-0.2
109,755	+		GFF5480	0.83	-0.1
109,755	+		GFF5480	0.83	+0.4
109,755	+		GFF5480	0.83	-1.0
109,755	+		GFF5480	0.83	-0.2
109,755	+		GFF5480	0.83	+0.1
109,756	-		GFF5480	0.83	+0.4
109,756	-		GFF5480	0.83	+3.8
109,756	-		GFF5480	0.83	-0.8
109,756	-		GFF5480	0.83	+0.3
109,756	-		GFF5480	0.83	+0.9
109,756	-		GFF5480	0.83	-0.4
109,756	-		GFF5480	0.83	-0.5
109,756	-		GFF5480	0.83	-1.7
109,756	-		GFF5480	0.83	-0.5
109,756	-		GFF5480	0.83	-0.2
109,756	-		GFF5480	0.83	+0.5
109,756	-		GFF5480	0.83	-1.5
109,756	-		GFF5480	0.83	-0.8
109,821	+				-0.2
109,822	-				+0.2
109,893	+				-0.8
109,894	-				-0.2
109,894	-				-0.5
110,152	+		GFF5481	0.64	+0.5
110,152	+		GFF5481	0.64	+1.8
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	+0.2
110,152	+		GFF5481	0.64	+0.1
110,152	+		GFF5481	0.64	-0.1
110,152	+		GFF5481	0.64	+0.3
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	+0.3
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	-0.1
110,152	+		GFF5481	0.64	-1.5
110,152	+		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	-1.4
110,153	-		GFF5481	0.64	-0.5
110,153	-		GFF5481	0.64	+0.8
110,153	-		GFF5481	0.64	-1.0
110,153	-		GFF5481	0.64	+1.0
110,153	-		GFF5481	0.64	+0.1
110,153	-		GFF5481	0.64	-0.3
110,153	-		GFF5481	0.64	-1.6
110,153	-		GFF5481	0.64	-1.0
110,153	-		GFF5481	0.64	-0.1
110,153	-		GFF5481	0.64	-0.5
110,153	-		GFF5481	0.64	-0.7
110,153	-		GFF5481	0.64	+1.5
110,153	-		GFF5481	0.64	-1.4
110,153	-		GFF5481	0.64	+0.4
110,197	+		GFF5481	0.77	-0.2
110,197	+		GFF5481	0.77	+1.2
110,197	+		GFF5481	0.77	-0.4
110,197	+		GFF5481	0.77	+0.3
110,197	+		GFF5481	0.77	-0.4
110,197	+		GFF5481	0.77	-2.3
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.3
110,197	+		GFF5481	0.77	-0.4
110,197	+		GFF5481	0.77	-0.2
110,197	+		GFF5481	0.77	-0.0
110,197	+		GFF5481	0.77	-0.2
110,197	+		GFF5481	0.77	-0.8
110,197	+		GFF5481	0.77	-0.5
110,198	-		GFF5481	0.77	-2.1
110,198	-		GFF5481	0.77	+0.5
110,198	-		GFF5481	0.77	+0.5
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-1.6
110,198	-		GFF5481	0.77	+0.6
110,198	-		GFF5481	0.77	-0.8
110,198	-		GFF5481	0.77	+0.3
110,200	+		GFF5481	0.78	+0.6
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.9
110,200	+		GFF5481	0.78	+0.0
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.0
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	+1.5
110,200	+		GFF5481	0.78	-1.2
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-1.0
110,200	+		GFF5481	0.78	+0.3
110,200	+		GFF5481	0.78	-0.2
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	+0.8
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-2.0
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-1.0
110,200	+		GFF5481	0.78	-1.2
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-1.0
110,200	+		GFF5481	0.78	-0.5
110,200	+		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	+1.3
110,201	-		GFF5481	0.78	+0.5
110,201	-		GFF5481	0.78	-0.0
110,201	-		GFF5481	0.78	-1.6
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	+0.0
110,201	-		GFF5481	0.78	-0.8
110,201	-		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	+0.3
110,201	-		GFF5481	0.78	-0.2
110,201	-		GFF5481	0.78	-0.2
110,201	-		GFF5481	0.78	+1.5
110,201	-		GFF5481	0.78	-1.1
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	-1.0
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	+0.4
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	+0.2
110,201	-		GFF5481	0.78	-1.4
110,201	-		GFF5481	0.78	-2.6
110,267	-				+0.7
110,327	+				+0.5
110,328	-				-1.0
110,560	+		GFF5482	0.37	-0.1
110,560	+		GFF5482	0.37	+0.2
110,560	+		GFF5482	0.37	-2.0
110,560	+		GFF5482	0.37	+0.4
110,560	+		GFF5482	0.37	-0.6
110,560	+		GFF5482	0.37	-0.3
110,560	+		GFF5482	0.37	+0.3
110,560	+		GFF5482	0.37	-0.1
110,560	+		GFF5482	0.37	-0.2
110,560	+		GFF5482	0.37	-0.8
110,560	+		GFF5482	0.37	+0.3
110,561	-		GFF5482	0.38	-1.6
110,561	-		GFF5482	0.38	-0.3
110,561	-		GFF5482	0.38	+0.5
110,561	-		GFF5482	0.38	-0.7
110,561	-		GFF5482	0.38	-0.5
110,561	-		GFF5482	0.38	+0.4
110,561	-		GFF5482	0.38	-0.2
110,561	-		GFF5482	0.38	-0.8
110,561	-		GFF5482	0.38	-0.8
110,561	-		GFF5482	0.38	+0.6
110,561	-		GFF5482	0.38	-0.3
110,561	-		GFF5482	0.38	+0.1
110,561	-		GFF5482	0.38	-0.1
110,701	+		GFF5482	0.67	+0.2
110,701	+		GFF5482	0.67	-0.2
110,701	+		GFF5482	0.67	+0.2
110,701	+		GFF5482	0.67	-0.2
110,701	+		GFF5482	0.67	-1.0
110,702	-		GFF5482	0.67	-0.5
110,702	-		GFF5482	0.67	-1.4
110,702	-		GFF5482	0.67	-0.3
110,924	+				+0.6
110,925	-				+0.4
110,925	-				+1.2
110,941	+				-0.3
110,941	+				-0.4
110,941	+				+0.6
110,941	+				+1.8
110,941	+				+0.8
110,941	+				+2.0
110,941	+				+0.3
110,941	+				-0.6
110,941	+				-1.1
110,941	+				-0.8
110,941	+				-0.1
110,941	+				-1.5
110,941	+				-0.1
110,941	+				+0.1
110,941	+				-2.8
110,941	+				+0.9
110,941	+				+0.2
110,941	+				+0.1
110,941	+				+0.4
110,941	+				-0.2
110,941	+				-1.7
110,941	+				-0.9
110,941	+				-0.0
110,941	+				-0.1
110,942	-				+0.2
110,942	-				-1.0
110,942	-				-0.3
110,942	-				-0.5
110,942	-				-0.7
110,942	-				-0.1
110,942	-				+0.3
110,942	-				+0.7
110,942	-				+0.3
110,942	-				+0.0
110,942	-				+0.8
110,942	-				-0.8
110,942	-				-0.3
110,942	-				+0.9
110,942	-				+0.3
110,942	-				-0.9
110,942	-				+0.2
110,942	-				-0.2
110,992	+				-0.7
110,992	+				-0.4
110,992	+				-0.5
110,992	+				-1.1
110,992	+				-0.2
110,992	+				-0.4
110,992	+				+0.2
110,992	+				-0.3
110,992	+				+0.1
110,993	-				+1.2
110,993	-				-0.4
110,993	-				+0.9
110,993	-				-1.3
110,993	-				-0.4
110,993	-				-0.2
110,993	-				-0.2
110,993	-				-1.0
111,021	+				-2.0
111,021	+				+0.0
111,021	+				-0.1
111,021	+				+0.1
111,022	-				-0.7
111,022	-				+0.8
111,022	-				+0.4
111,074	+				-0.2
111,075	-				+1.1
111,075	-				+0.8
111,075	-				-1.5
111,075	-				+1.4
111,075	-				+1.1
111,075	-				+0.9
111,075	-				-0.0
111,075	-				-1.0
111,100	+				+0.3
111,100	+				+0.3
111,100	+				+0.0
111,100	+				+0.4
111,100	+				+2.8
111,100	+				+0.5
111,100	+				-0.3
111,100	+				+1.2
111,100	+				-0.9
111,100	+				+0.2
111,100	+				-0.1
111,100	+				+0.1
111,100	+				+1.8
111,100	+				-0.1
111,100	+				+0.5
111,101	-				+0.1
111,101	-				-0.7
111,101	-				+0.1
111,101	-				-1.3
111,101	-				-0.4
111,101	-				+0.5
111,101	-				-1.1
111,101	-				-0.1
111,101	-				-0.3
111,101	-				-0.0
111,101	-				-0.5
111,112	+				+0.6
111,112	+				+0.0
111,112	+				+1.8
111,113	-				+0.4
111,221	-				-0.3
111,221	-				-1.2
111,244	+				-0.0
111,245	-				-0.5
111,245	-				+0.2
111,245	-				+1.1