Strain Fitness in Variovorax sp. SCN45 around GFF5382

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
6,965	+				+0.2
6,966	-				+0.0
6,966	-				-0.4
7,192	-		GFF5381	0.22	+0.2
7,192	-		GFF5381	0.22	+0.3
7,389	+		GFF5381	0.43	-0.0
7,389	+		GFF5381	0.43	+0.6
7,389	+		GFF5381	0.43	+0.3
7,390	-		GFF5381	0.44	-0.4
7,390	-		GFF5381	0.44	+0.7
7,390	-		GFF5381	0.44	+0.0
7,390	-		GFF5381	0.44	+2.4
7,464	+		GFF5381	0.51	-0.3
7,464	+		GFF5381	0.51	-0.2
7,464	+		GFF5381	0.51	-1.1
7,464	+		GFF5381	0.51	-0.4
7,464	+		GFF5381	0.51	+0.2
7,464	+		GFF5381	0.51	-1.0
7,465	-		GFF5381	0.52	-1.8
7,465	-		GFF5381	0.52	+0.1
7,791	+		GFF5381	0.86	+0.4
7,791	+		GFF5381	0.86	+0.1
7,792	-		GFF5381	0.86	+1.1
7,792	-		GFF5381	0.86	-0.5
7,940	+				+0.3
7,940	+				+0.1
7,940	+				-2.2
8,215	+		GFF5382	0.28	+0.1
8,215	+		GFF5382	0.28	-1.4
8,215	+		GFF5382	0.28	+0.5
8,215	+		GFF5382	0.28	-1.1
8,216	-		GFF5382	0.28	+1.1
8,216	-		GFF5382	0.28	-0.2
8,216	-		GFF5382	0.28	-0.5
8,216	-		GFF5382	0.28	+0.7
8,216	-		GFF5382	0.28	-0.7
8,216	-		GFF5382	0.28	-0.1
8,216	-		GFF5382	0.28	+0.0
8,408	+		GFF5382	0.48	+0.3
8,408	+		GFF5382	0.48	-1.7
8,408	+		GFF5382	0.48	-0.8
8,408	+		GFF5382	0.48	-0.8
8,408	+		GFF5382	0.48	+1.1
8,408	+		GFF5382	0.48	-0.4
8,408	+		GFF5382	0.48	+0.5
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.9
8,408	+		GFF5382	0.48	-1.4
8,408	+		GFF5382	0.48	+0.4
8,408	+		GFF5382	0.48	+1.1
8,408	+		GFF5382	0.48	-0.3
8,408	+		GFF5382	0.48	-0.0
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.3
8,408	+		GFF5382	0.48	-1.1
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	+0.2
8,408	+		GFF5382	0.48	-0.7
8,408	+		GFF5382	0.48	-1.0
8,408	+		GFF5382	0.48	-0.9
8,409	-		GFF5382	0.48	-0.6
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	-0.7
8,409	-		GFF5382	0.48	+1.2
8,409	-		GFF5382	0.48	-2.2
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	+0.3
8,409	-		GFF5382	0.48	+1.8
8,409	-		GFF5382	0.48	+1.4
8,409	-		GFF5382	0.48	+1.0
8,409	-		GFF5382	0.48	-0.5
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	+0.5
8,409	-		GFF5382	0.48	+0.1
8,409	-		GFF5382	0.48	+1.3
8,409	-		GFF5382	0.48	+1.1
8,409	-		GFF5382	0.48	-0.4
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	+0.6
8,409	-		GFF5382	0.48	+0.5
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	+2.4
8,456	+		GFF5382	0.52	-0.5
8,456	+		GFF5382	0.52	-0.8
8,456	+		GFF5382	0.52	+0.7
8,456	+		GFF5382	0.52	-1.3
8,456	+		GFF5382	0.52	+0.3
8,456	+		GFF5382	0.52	-0.5
8,456	+		GFF5382	0.52	-0.6
8,456	+		GFF5382	0.52	-0.1
8,456	+		GFF5382	0.52	-0.8
8,456	+		GFF5382	0.52	+0.5
8,456	+		GFF5382	0.52	+0.3
8,456	+		GFF5382	0.52	-0.1
8,457	-		GFF5382	0.52	-0.6
8,457	-		GFF5382	0.52	+0.4
8,457	-		GFF5382	0.52	-0.1
8,457	-		GFF5382	0.52	-0.3
8,457	-		GFF5382	0.52	-0.4
8,457	-		GFF5382	0.52	-0.5
8,457	-		GFF5382	0.52	-0.2
8,457	-		GFF5382	0.52	+0.1
8,457	-		GFF5382	0.52	+1.3
8,457	-		GFF5382	0.52	-0.7
8,457	-		GFF5382	0.52	-1.5
8,457	-		GFF5382	0.52	+0.7
8,457	-		GFF5382	0.52	-0.7
8,457	-		GFF5382	0.52	+0.2
8,609	+		GFF5382	0.68	-0.1
8,609	+		GFF5382	0.68	-0.1
8,609	+		GFF5382	0.68	-0.1
8,610	-		GFF5382	0.68	-0.1
8,658	-		GFF5382	0.73	+0.8
8,658	-		GFF5382	0.73	+0.3
8,823	+		GFF5382	0.90	-0.8
8,823	+		GFF5382	0.90	-0.0
8,823	+		GFF5382	0.90	-0.2
8,824	-		GFF5382	0.90	-0.0
8,824	-		GFF5382	0.90	-0.0
8,824	-		GFF5382	0.90	-1.0
8,912	+				-0.6
8,913	-				-0.1
8,913	-				+0.6
8,913	-				-0.8
8,913	-				-0.0
8,913	-				+0.2
8,913	-				+0.6
9,006	+				+1.0
9,006	+				+1.5
9,006	+				+2.0
9,006	+				+0.6
9,006	+				+0.9
9,006	+				+0.7
9,006	+				+0.8
9,006	+				+2.2
9,006	+				-1.7
9,006	+				-0.2
9,007	-				+0.9
9,007	-				-0.8
9,007	-				+1.6
9,007	-				+0.9
9,071	+				-0.7
9,071	+				+0.5
9,071	+				-2.0
9,071	+				+0.3
9,071	+				+0.8
9,071	+				+1.2
9,071	+				+0.3
9,071	+				-1.7
9,071	+				+0.2
9,071	+				-1.8
9,071	+				-0.0
9,071	+				-0.2
9,071	+				-1.2
9,071	+				+0.4
9,072	-				-0.8
9,072	-				-1.1
9,072	-				+0.2
9,072	-				+0.6
9,072	-				+1.1
9,072	-				-0.3
9,072	-				-0.5
9,072	-				-0.7
9,072	-				-0.1
9,072	-				-0.2
9,072	-				+0.2
9,072	-				+0.1
9,072	-				+0.2
9,072	-				-0.7
9,072	-				+0.2
9,072	-				-0.0
9,072	-				-1.0
9,072	-				-0.4
9,237	-		GFF5383	0.10	+0.2
9,548	+		GFF5383	0.21	+2.5
9,548	+		GFF5383	0.21	+0.2
9,548	+		GFF5383	0.21	+1.6
9,549	-		GFF5383	0.21	+1.8
9,549	-		GFF5383	0.21	+0.5
9,549	-		GFF5383	0.21	+1.2