Strain Fitness in Variovorax sp. SCN45 around GFF5348

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5346 and GFF5347 are separated by 10 nucleotidesGFF5347 and GFF5348 overlap by 4 nucleotidesGFF5348 and GFF5349 overlap by 4 nucleotidesGFF5349 and GFF5350 are separated by 19 nucleotides GFF5346 - Putative outer membrane lipoprotein, at 224,775 to 225,587 GFF5346 GFF5347 - hypothetical protein, at 225,598 to 225,948 GFF5347 GFF5348 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 225,945 to 227,036 GFF5348 GFF5349 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 227,033 to 227,650 GFF5349 GFF5350 - Imidazole glycerol phosphate synthase amidotransferase subunit HisH, at 227,670 to 228,326 GFF5350 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3at 225.015 kb on + strand, within GFF5346at 225.015 kb on + strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.712 kb on + strand, within GFF5347at 225.712 kb on + strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.845 kb on - strand, within GFF5347at 225.877 kb on + strand, within GFF5347at 225.877 kb on + strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.931 kb on + strandat 225.931 kb on + strandat 225.931 kb on + strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.999 kb on - strandat 226.014 kb on + strandat 226.014 kb on + strandat 226.014 kb on + strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.021 kb on + strandat 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.428 kb on + strand, within GFF5348at 226.428 kb on + strand, within GFF5348at 226.429 kb on - strand, within GFF5348at 226.438 kb on - strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.647 kb on + strand, within GFF5348at 226.647 kb on + strand, within GFF5348at 226.648 kb on - strand, within GFF5348at 226.648 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.940 kb on + strandat 226.940 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.032 kb on + strandat 227.033 kb on - strandat 227.033 kb on - strandat 227.669 kb on + strandat 227.669 kb on + strandat 227.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
225,015 + GFF5346 0.30 -1.1
225,015 + GFF5346 0.30 -0.6
225,016 - GFF5346 0.30 -0.5
225,016 - GFF5346 0.30 -0.3
225,016 - GFF5346 0.30 -0.0
225,208 - GFF5346 0.53 +0.4
225,208 - GFF5346 0.53 +0.1
225,243 + GFF5346 0.58 -2.6
225,243 + GFF5346 0.58 -0.5
225,244 - GFF5346 0.58 +0.3
225,244 - GFF5346 0.58 -0.9
225,244 - GFF5346 0.58 -0.4
225,244 - GFF5346 0.58 -1.0
225,244 - GFF5346 0.58 -0.5
225,244 - GFF5346 0.58 -0.0
225,287 + GFF5346 0.63 +0.0
225,287 + GFF5346 0.63 +1.4
225,287 + GFF5346 0.63 +0.6
225,315 + GFF5346 0.66 -0.2
225,315 + GFF5346 0.66 -1.5
225,315 + GFF5346 0.66 +0.1
225,315 + GFF5346 0.66 -0.5
225,316 - GFF5346 0.67 +1.1
225,316 - GFF5346 0.67 +0.0
225,411 + GFF5346 0.78 +0.6
225,411 + GFF5346 0.78 +0.5
225,411 + GFF5346 0.78 -0.3
225,411 + GFF5346 0.78 +0.4
225,412 - GFF5346 0.78 +1.0
225,412 - GFF5346 0.78 -0.4
225,412 - GFF5346 0.78 -0.2
225,412 - GFF5346 0.78 +0.3
225,412 - GFF5346 0.78 +0.2
225,558 + +0.3
225,558 + +0.6
225,558 + +0.0
225,558 + -1.7
225,558 + +2.2
225,558 + -0.8
225,559 - -1.0
225,559 - +1.8
225,559 - -0.3
225,559 - +0.4
225,712 + GFF5347 0.32 +0.9
225,712 + GFF5347 0.32 -1.2
225,713 - GFF5347 0.33 -0.2
225,713 - GFF5347 0.33 +0.3
225,713 - GFF5347 0.33 -1.5
225,713 - GFF5347 0.33 +0.6
225,713 - GFF5347 0.33 -1.5
225,713 - GFF5347 0.33 -0.0
225,721 + GFF5347 0.35 +1.6
225,721 + GFF5347 0.35 -0.0
225,721 + GFF5347 0.35 -0.7
225,722 - GFF5347 0.35 -0.0
225,722 - GFF5347 0.35 -0.2
225,722 - GFF5347 0.35 +1.6
225,722 - GFF5347 0.35 -0.4
225,722 - GFF5347 0.35 -1.4
225,724 + GFF5347 0.36 +0.4
225,724 + GFF5347 0.36 -1.7
225,724 + GFF5347 0.36 +0.6
225,724 + GFF5347 0.36 -0.1
225,724 + GFF5347 0.36 +0.4
225,724 + GFF5347 0.36 -0.5
225,724 + GFF5347 0.36 -0.7
225,724 + GFF5347 0.36 -0.8
225,725 - GFF5347 0.36 +0.8
225,725 - GFF5347 0.36 +0.2
225,725 - GFF5347 0.36 +0.4
225,725 - GFF5347 0.36 -1.4
225,725 - GFF5347 0.36 -0.4
225,725 - GFF5347 0.36 +0.3
225,725 - GFF5347 0.36 -1.4
225,844 + GFF5347 0.70 -2.4
225,844 + GFF5347 0.70 +1.6
225,844 + GFF5347 0.70 +0.8
225,845 - GFF5347 0.70 -0.4
225,877 + GFF5347 0.79 -1.8
225,877 + GFF5347 0.79 -1.2
225,878 - GFF5347 0.80 -0.0
225,878 - GFF5347 0.80 +0.6
225,878 - GFF5347 0.80 +1.6
225,878 - GFF5347 0.80 -1.9
225,878 - GFF5347 0.80 -0.3
225,931 + -0.7
225,931 + -1.8
225,931 + -0.8
225,932 - -0.1
225,932 - +0.1
225,932 - -0.3
225,932 - +2.9
225,932 - -1.6
225,932 - -0.3
225,932 - -0.3
225,997 + -0.9
225,997 + -0.7
225,997 + +0.2
225,997 + -0.8
225,997 + +1.0
225,997 + -0.6
225,998 - -0.6
225,998 - +0.2
225,998 - +0.6
225,998 - -0.7
225,998 - +0.0
225,998 - -0.3
225,998 - -0.5
225,998 - +0.8
225,999 - +0.1
226,014 + +0.6
226,014 + -0.0
226,014 + -0.1
226,015 - +1.3
226,015 - -1.7
226,015 - -0.5
226,015 - -0.3
226,015 - -0.9
226,015 - +0.0
226,021 + -1.2
226,308 + GFF5348 0.33 +0.2
226,308 + GFF5348 0.33 -0.4
226,308 + GFF5348 0.33 +1.4
226,308 + GFF5348 0.33 -0.6
226,308 + GFF5348 0.33 +0.9
226,308 + GFF5348 0.33 -1.4
226,308 + GFF5348 0.33 +0.1
226,308 + GFF5348 0.33 -1.9
226,308 + GFF5348 0.33 +0.2
226,308 + GFF5348 0.33 -0.4
226,308 + GFF5348 0.33 +0.6
226,308 + GFF5348 0.33 +0.1
226,308 + GFF5348 0.33 +0.1
226,308 + GFF5348 0.33 -0.6
226,308 + GFF5348 0.33 -0.4
226,308 + GFF5348 0.33 -0.7
226,309 - GFF5348 0.33 -1.2
226,309 - GFF5348 0.33 -1.0
226,309 - GFF5348 0.33 -1.0
226,309 - GFF5348 0.33 +1.1
226,309 - GFF5348 0.33 +0.1
226,309 - GFF5348 0.33 +1.0
226,309 - GFF5348 0.33 -0.7
226,309 - GFF5348 0.33 +0.4
226,309 - GFF5348 0.33 -0.0
226,309 - GFF5348 0.33 -0.8
226,309 - GFF5348 0.33 +0.2
226,309 - GFF5348 0.33 +0.6
226,309 - GFF5348 0.33 +0.6
226,428 + GFF5348 0.44 +0.8
226,428 + GFF5348 0.44 +0.6
226,429 - GFF5348 0.44 +0.6
226,438 - GFF5348 0.45 -0.5
226,539 + GFF5348 0.54 -0.1
226,539 + GFF5348 0.54 -0.8
226,539 + GFF5348 0.54 +0.5
226,539 + GFF5348 0.54 +0.1
226,539 + GFF5348 0.54 +0.4
226,539 + GFF5348 0.54 +0.2
226,539 + GFF5348 0.54 -0.0
226,539 + GFF5348 0.54 -0.2
226,540 - GFF5348 0.54 +0.3
226,540 - GFF5348 0.54 -1.4
226,540 - GFF5348 0.54 -0.2
226,540 - GFF5348 0.54 +0.5
226,540 - GFF5348 0.54 -0.4
226,563 + GFF5348 0.57 -0.4
226,563 + GFF5348 0.57 -0.2
226,563 + GFF5348 0.57 +0.3
226,563 + GFF5348 0.57 -0.4
226,563 + GFF5348 0.57 +0.3
226,563 + GFF5348 0.57 -0.6
226,563 + GFF5348 0.57 +0.3
226,563 + GFF5348 0.57 +1.1
226,564 - GFF5348 0.57 +0.6
226,564 - GFF5348 0.57 +0.1
226,564 - GFF5348 0.57 -0.4
226,564 - GFF5348 0.57 -1.5
226,564 - GFF5348 0.57 +0.3
226,564 - GFF5348 0.57 -0.1
226,564 - GFF5348 0.57 +1.9
226,647 + GFF5348 0.64 -1.7
226,647 + GFF5348 0.64 -1.3
226,648 - GFF5348 0.64 -0.2
226,648 - GFF5348 0.64 +0.3
226,702 - GFF5348 0.69 -0.7
226,702 - GFF5348 0.69 -0.7
226,702 - GFF5348 0.69 +0.1
226,702 - GFF5348 0.69 -0.5
226,702 - GFF5348 0.69 -0.1
226,702 - GFF5348 0.69 -0.3
226,940 + +0.7
226,940 + +0.6
227,032 + -2.3
227,032 + -0.9
227,032 + +1.2
227,032 + -0.5
227,032 + -0.6
227,032 + +0.3
227,032 + +0.2
227,032 + -0.3
227,033 - +0.4
227,033 - -0.8
227,669 + -0.5
227,669 + -2.0
227,670 - +0.7

Or see this region's nucleotide sequence