Strain Fitness in Variovorax sp. SCN45 around GFF5261

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5260 and GFF5261 are separated by 18 nucleotidesGFF5261 and GFF5262 are separated by 144 nucleotides GFF5260 - Uncharacterized protein ygiD, at 125,433 to 126,341 GFF5260 GFF5261 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 126,360 to 127,832 GFF5261 GFF5262 - Ferric iron ABC transporter, iron-binding protein, at 127,977 to 128,990 GFF5262 Position (kb) 126 127 128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 125.417 kb on - strandat 125.417 kb on - strandat 125.794 kb on - strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.910 kb on + strand, within GFF5260at 125.911 kb on - strand, within GFF5260at 125.959 kb on - strand, within GFF5260at 125.982 kb on + strand, within GFF5260at 125.983 kb on - strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.228 kb on + strand, within GFF5260at 126.229 kb on - strand, within GFF5260at 126.229 kb on - strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.231 kb on + strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.232 kb on - strand, within GFF5260at 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.288 kb on + strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.289 kb on - strandat 126.352 kb on - strandat 126.361 kb on + strandat 126.361 kb on + strandat 126.361 kb on + strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.362 kb on - strandat 126.571 kb on + strand, within GFF5261at 126.571 kb on + strand, within GFF5261at 126.847 kb on + strand, within GFF5261at 126.847 kb on + strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.848 kb on - strand, within GFF5261at 126.967 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.985 kb on + strand, within GFF5261at 126.986 kb on - strand, within GFF5261at 127.171 kb on + strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.172 kb on - strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.315 kb on + strand, within GFF5261at 127.316 kb on - strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on + strand, within GFF5261at 127.501 kb on - strand, within GFF5261at 127.502 kb on - strand, within GFF5261at 127.502 kb on - strand, within GFF5261at 127.556 kb on - strand, within GFF5261at 127.588 kb on + strand, within GFF5261at 127.588 kb on + strand, within GFF5261at 127.589 kb on - strand, within GFF5261at 127.889 kb on + strandat 127.889 kb on + strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.890 kb on - strandat 127.896 kb on - strandat 127.914 kb on + strandat 127.914 kb on + strandat 127.914 kb on + strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.915 kb on - strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.917 kb on + strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.918 kb on - strandat 127.924 kb on - strandat 127.924 kb on - strandat 128.097 kb on + strand, within GFF5262at 128.097 kb on + strand, within GFF5262at 128.098 kb on - strand, within GFF5262at 128.098 kb on - strand, within GFF5262at 128.105 kb on + strand, within GFF5262at 128.106 kb on - strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.259 kb on + strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.260 kb on - strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.322 kb on + strand, within GFF5262at 128.323 kb on - strand, within GFF5262at 128.323 kb on - strand, within GFF5262at 128.340 kb on + strand, within GFF5262at 128.340 kb on + strand, within GFF5262at 128.341 kb on - strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.364 kb on + strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.365 kb on - strand, within GFF5262at 128.436 kb on + strand, within GFF5262at 128.437 kb on - strand, within GFF5262at 128.437 kb on - strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.484 kb on + strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.485 kb on - strand, within GFF5262at 128.538 kb on + strand, within GFF5262at 128.538 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.571 kb on + strand, within GFF5262at 128.572 kb on - strand, within GFF5262at 128.572 kb on - strand, within GFF5262at 128.775 kb on + strand, within GFF5262at 128.775 kb on + strand, within GFF5262at 128.776 kb on - strand, within GFF5262at 128.776 kb on - strand, within GFF5262

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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125,417 - +1.0
125,417 - -0.0
125,794 - GFF5260 0.40 +0.5
125,910 + GFF5260 0.52 -0.4
125,910 + GFF5260 0.52 +0.1
125,910 + GFF5260 0.52 -0.4
125,910 + GFF5260 0.52 +0.2
125,910 + GFF5260 0.52 -0.4
125,910 + GFF5260 0.52 -1.4
125,910 + GFF5260 0.52 +0.4
125,910 + GFF5260 0.52 -0.2
125,911 - GFF5260 0.53 -0.4
125,959 - GFF5260 0.58 -0.4
125,982 + GFF5260 0.60 -0.2
125,983 - GFF5260 0.61 -0.6
126,228 + GFF5260 0.87 -0.0
126,228 + GFF5260 0.87 -0.1
126,228 + GFF5260 0.87 +0.6
126,228 + GFF5260 0.87 -0.2
126,228 + GFF5260 0.87 -0.6
126,229 - GFF5260 0.88 +0.2
126,229 - GFF5260 0.88 -0.0
126,231 + GFF5260 0.88 +1.2
126,231 + GFF5260 0.88 +0.9
126,231 + GFF5260 0.88 -0.2
126,231 + GFF5260 0.88 +0.4
126,231 + GFF5260 0.88 -0.5
126,231 + GFF5260 0.88 +0.4
126,232 - GFF5260 0.88 +0.3
126,232 - GFF5260 0.88 +0.1
126,232 - GFF5260 0.88 -1.5
126,288 + +0.1
126,288 + -0.7
126,288 + +0.1
126,288 + -0.6
126,288 + +0.6
126,288 + -0.5
126,289 - +0.7
126,289 - -0.3
126,289 - +0.7
126,289 - -0.4
126,289 - -0.9
126,289 - +0.6
126,352 - +1.2
126,361 + -0.5
126,361 + -1.4
126,361 + -1.0
126,362 - +0.0
126,362 - -0.3
126,362 - -0.3
126,362 - -0.1
126,571 + GFF5261 0.14 -1.7
126,571 + GFF5261 0.14 -2.3
126,847 + GFF5261 0.33 -2.9
126,847 + GFF5261 0.33 -2.8
126,848 - GFF5261 0.33 -2.0
126,848 - GFF5261 0.33 -0.7
126,848 - GFF5261 0.33 -3.7
126,848 - GFF5261 0.33 -1.2
126,967 + GFF5261 0.41 -3.0
126,985 + GFF5261 0.42 -3.0
126,985 + GFF5261 0.42 -2.3
126,985 + GFF5261 0.42 -2.7
126,985 + GFF5261 0.42 -3.5
126,985 + GFF5261 0.42 -2.4
126,986 - GFF5261 0.42 -1.5
127,171 + GFF5261 0.55 +0.0
127,172 - GFF5261 0.55 -0.4
127,172 - GFF5261 0.55 -4.2
127,172 - GFF5261 0.55 -3.2
127,172 - GFF5261 0.55 -2.1
127,315 + GFF5261 0.65 -1.5
127,315 + GFF5261 0.65 -2.0
127,316 - GFF5261 0.65 -2.3
127,501 + GFF5261 0.77 -3.2
127,501 + GFF5261 0.77 -1.8
127,501 + GFF5261 0.77 +0.6
127,501 + GFF5261 0.77 -4.3
127,501 + GFF5261 0.77 -1.9
127,501 + GFF5261 0.77 -2.3
127,501 + GFF5261 0.77 -2.3
127,501 + GFF5261 0.77 -1.8
127,501 + GFF5261 0.77 -1.0
127,501 + GFF5261 0.77 -2.0
127,501 + GFF5261 0.77 -1.2
127,501 + GFF5261 0.77 +0.6
127,501 - GFF5261 0.77 -2.8
127,502 - GFF5261 0.78 -2.1
127,502 - GFF5261 0.78 +0.0
127,556 - GFF5261 0.81 -4.8
127,588 + GFF5261 0.83 -4.2
127,588 + GFF5261 0.83 -2.7
127,589 - GFF5261 0.83 -1.0
127,889 + +0.8
127,889 + +0.2
127,890 - +0.2
127,890 - +0.4
127,890 - +0.2
127,890 - +0.6
127,896 - +0.5
127,914 + -0.3
127,914 + -1.0
127,914 + -0.1
127,915 - +0.2
127,915 - -0.5
127,915 - +0.8
127,915 - +0.6
127,917 + -1.2
127,917 + -0.4
127,917 + +0.8
127,917 + +0.6
127,917 + +1.2
127,917 + -0.2
127,917 + +0.4
127,918 - -0.0
127,918 - +1.6
127,918 - -0.4
127,918 - +0.3
127,918 - +0.4
127,924 - +0.1
127,924 - -1.4
128,097 + GFF5262 0.12 -0.7
128,097 + GFF5262 0.12 +0.3
128,098 - GFF5262 0.12 +0.1
128,098 - GFF5262 0.12 -1.0
128,105 + GFF5262 0.13 +0.5
128,106 - GFF5262 0.13 +0.3
128,259 + GFF5262 0.28 +0.6
128,259 + GFF5262 0.28 +0.0
128,259 + GFF5262 0.28 +0.4
128,259 + GFF5262 0.28 -0.5
128,259 + GFF5262 0.28 -0.4
128,259 + GFF5262 0.28 -0.4
128,259 + GFF5262 0.28 +1.4
128,259 + GFF5262 0.28 +0.2
128,259 + GFF5262 0.28 +1.1
128,260 - GFF5262 0.28 +0.9
128,260 - GFF5262 0.28 +0.4
128,260 - GFF5262 0.28 -0.0
128,260 - GFF5262 0.28 -2.3
128,322 + GFF5262 0.34 -0.7
128,322 + GFF5262 0.34 +0.0
128,322 + GFF5262 0.34 +1.2
128,323 - GFF5262 0.34 -0.4
128,323 - GFF5262 0.34 -0.5
128,340 + GFF5262 0.36 +0.6
128,340 + GFF5262 0.36 +0.7
128,341 - GFF5262 0.36 -0.7
128,364 + GFF5262 0.38 -1.3
128,364 + GFF5262 0.38 +0.8
128,364 + GFF5262 0.38 +2.4
128,364 + GFF5262 0.38 +0.9
128,364 + GFF5262 0.38 -0.6
128,364 + GFF5262 0.38 +1.5
128,365 - GFF5262 0.38 +0.3
128,365 - GFF5262 0.38 +0.3
128,365 - GFF5262 0.38 +0.8
128,365 - GFF5262 0.38 +1.3
128,365 - GFF5262 0.38 +0.8
128,436 + GFF5262 0.45 +2.6
128,437 - GFF5262 0.45 -0.3
128,437 - GFF5262 0.45 -0.6
128,484 + GFF5262 0.50 +0.6
128,484 + GFF5262 0.50 -0.6
128,484 + GFF5262 0.50 +0.5
128,484 + GFF5262 0.50 +1.4
128,485 - GFF5262 0.50 +0.0
128,485 - GFF5262 0.50 +0.3
128,485 - GFF5262 0.50 +0.6
128,485 - GFF5262 0.50 -0.2
128,538 + GFF5262 0.55 +0.7
128,538 + GFF5262 0.55 +0.6
128,571 + GFF5262 0.59 +0.8
128,571 + GFF5262 0.59 +0.4
128,571 + GFF5262 0.59 +0.0
128,572 - GFF5262 0.59 -0.3
128,572 - GFF5262 0.59 +0.5
128,775 + GFF5262 0.79 +0.5
128,775 + GFF5262 0.79 +0.2
128,776 - GFF5262 0.79 +0.2
128,776 - GFF5262 0.79 -0.6

Or see this region's nucleotide sequence