Strain Fitness in Variovorax sp. SCN45 around GFF5246

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
108,326	+		GFF5244	0.50	-0.4
108,490	-		GFF5244	0.84	+0.9
108,513	+		GFF5244	0.88	-0.1
108,514	-		GFF5244	0.88	-1.4
108,519	+		GFF5244	0.89	-0.7
108,519	+		GFF5244	0.89	+0.4
108,519	+		GFF5244	0.89	-1.1
108,519	+		GFF5244	0.89	-2.2
108,519	+		GFF5244	0.89	-0.3
108,519	+		GFF5244	0.89	+0.3
108,519	+		GFF5244	0.89	+0.9
108,520	-		GFF5244	0.90	+0.7
108,520	-		GFF5244	0.90	+0.0
108,520	-		GFF5244	0.90	-0.6
108,520	-		GFF5244	0.90	-0.3
108,520	-		GFF5244	0.90	-1.1
108,520	-		GFF5244	0.90	-0.3
108,581	+				-0.6
108,581	+				-0.9
108,923	+		GFF5245	0.45	-0.3
108,923	+		GFF5245	0.45	-1.5
108,923	+		GFF5245	0.45	-0.4
108,923	+		GFF5245	0.45	-0.7
108,923	+		GFF5245	0.45	+0.2
108,923	+		GFF5245	0.45	+0.0
108,923	+		GFF5245	0.45	+0.0
108,923	+		GFF5245	0.45	-0.6
108,923	+		GFF5245	0.45	-1.0
108,923	+		GFF5245	0.45	-0.7
108,923	+		GFF5245	0.45	-0.0
108,923	+		GFF5245	0.45	-0.0
108,923	+		GFF5245	0.45	-0.7
108,923	+		GFF5245	0.45	-1.3
108,923	+		GFF5245	0.45	-1.0
108,923	+		GFF5245	0.45	+0.0
108,923	+		GFF5245	0.45	-0.4
108,923	+		GFF5245	0.45	-0.3
108,923	+		GFF5245	0.45	-0.5
108,923	+		GFF5245	0.45	-0.2
108,923	+		GFF5245	0.45	+0.0
108,924	-		GFF5245	0.45	-0.5
108,924	-		GFF5245	0.45	-0.3
108,924	-		GFF5245	0.45	+1.6
108,924	-		GFF5245	0.45	-0.1
108,924	-		GFF5245	0.45	-1.5
108,924	-		GFF5245	0.45	-0.7
108,924	-		GFF5245	0.45	+0.7
108,924	-		GFF5245	0.45	-0.3
108,924	-		GFF5245	0.45	-0.2
108,924	-		GFF5245	0.45	-0.3
108,924	-		GFF5245	0.45	+0.3
108,924	-		GFF5245	0.45	+1.2
108,924	-		GFF5245	0.45	+0.1
108,924	-		GFF5245	0.45	-0.4
108,924	-		GFF5245	0.45	-0.4
108,924	-		GFF5245	0.45	-0.1
108,924	-		GFF5245	0.45	+0.4
108,924	-		GFF5245	0.45	+0.0
109,277	-				-1.9
109,303	+				-1.4
109,304	-				-1.2
109,304	-				+1.2
109,309	+				-1.4
109,693	+		GFF5246	0.28	-1.1
109,693	+		GFF5246	0.28	-0.4
109,694	-		GFF5246	0.28	-2.0
109,749	+		GFF5246	0.31	-1.3
109,907	-		GFF5246	0.41	+1.0
109,907	-		GFF5246	0.41	-0.2
109,940	-		GFF5246	0.43	-1.8
109,940	-		GFF5246	0.43	-1.5
110,050	+		GFF5246	0.50	-3.6
110,051	-		GFF5246	0.50	-1.2
110,051	-		GFF5246	0.50	-2.3
110,051	-		GFF5246	0.50	-2.3
110,205	+		GFF5246	0.60	-0.4
110,205	+		GFF5246	0.60	-1.4
110,206	-		GFF5246	0.60	-1.2
110,239	+		GFF5246	0.62	-5.0
110,239	+		GFF5246	0.62	-2.0
110,239	+		GFF5246	0.62	-1.4
110,239	+		GFF5246	0.62	-1.8
110,239	+		GFF5246	0.62	-2.1
110,239	+		GFF5246	0.62	-3.0
110,239	+		GFF5246	0.62	-0.8
110,240	-		GFF5246	0.62	-3.3
110,240	-		GFF5246	0.62	-2.1
110,240	-		GFF5246	0.62	-0.7
110,240	-		GFF5246	0.62	-2.8
110,240	-		GFF5246	0.62	-2.0
110,240	-		GFF5246	0.62	-1.0
110,240	-		GFF5246	0.62	+1.6
110,247	+		GFF5246	0.63	-1.2
110,422	+		GFF5246	0.74	-1.2
110,422	+		GFF5246	0.74	-1.2
110,423	-		GFF5246	0.74	-1.2
110,423	-		GFF5246	0.74	-3.3
110,423	-		GFF5246	0.74	-0.6
110,423	-		GFF5246	0.74	-1.7
110,423	-		GFF5246	0.74	-2.3
110,423	-		GFF5246	0.74	-0.4
110,434	+		GFF5246	0.75	-1.5
110,434	+		GFF5246	0.75	-1.1
110,434	+		GFF5246	0.75	-0.7
110,434	+		GFF5246	0.75	-2.9
110,435	-		GFF5246	0.75	-0.8
110,435	-		GFF5246	0.75	-2.3
110,435	-		GFF5246	0.75	-1.4
110,636	+		GFF5246	0.87	-3.8
110,636	+		GFF5246	0.87	-1.5
110,636	+		GFF5246	0.87	-2.2
110,637	-		GFF5246	0.87	-1.5
110,637	-		GFF5246	0.87	+1.2
110,637	-		GFF5246	0.87	-3.4
110,638	+		GFF5246	0.88	-1.5
110,638	+		GFF5246	0.88	-1.1
110,638	+		GFF5246	0.88	-1.7
110,639	-		GFF5246	0.88	-0.5
110,639	-		GFF5246	0.88	-3.5
110,639	-		GFF5246	0.88	-0.3
110,639	-		GFF5246	0.88	-0.4
110,639	-		GFF5246	0.88	-0.8
110,761	+				-1.0
110,761	+				-1.2
110,762	-				-0.4
110,762	-				-3.6
110,779	-				-0.4
110,791	+				-2.0
110,792	-				-1.7
110,817	-				+1.1
110,863	+				+2.9
110,863	+				-0.2
110,863	+				+0.8
110,863	+				-2.5
110,864	-				-0.0
110,876	+				+0.6
110,877	-				-1.6
110,877	-				-0.5
110,877	-				-0.2
110,877	-				+0.2
110,903	+				-0.3
110,904	-				+1.4
110,904	-				-1.2
110,904	-				-0.5
110,904	-				-0.2
110,982	-				+0.0
111,013	+				-0.2
111,013	+				-1.5
111,014	-				-0.7
111,014	-				+0.2
111,034	-		GFF5247	0.11	-1.0
111,241	+		GFF5247	0.29	+0.5
111,242	-		GFF5247	0.29	-0.8
111,242	-		GFF5247	0.29	-0.7
111,242	-		GFF5247	0.29	-0.6
111,263	+		GFF5247	0.31	+2.2
111,263	+		GFF5247	0.31	+0.0
111,263	+		GFF5247	0.31	-0.8
111,386	+		GFF5247	0.42	+0.2
111,387	-		GFF5247	0.42	-1.3
111,519	+		GFF5247	0.54	-0.6
111,519	+		GFF5247	0.54	+1.0
111,520	-		GFF5247	0.54	-0.4
111,533	-		GFF5247	0.55	-0.2
111,608	+		GFF5247	0.62	-0.1
111,608	+		GFF5247	0.62	+1.0
111,608	+		GFF5247	0.62	+0.3
111,608	+		GFF5247	0.62	-0.7
111,609	-		GFF5247	0.62	-0.0
111,609	-		GFF5247	0.62	-0.3
111,609	-		GFF5247	0.62	-0.7
111,609	-		GFF5247	0.62	-0.5
111,683	+		GFF5247	0.68	-0.4
111,684	-		GFF5247	0.69	-0.3
111,684	-		GFF5247	0.69	+0.4
111,684	-		GFF5247	0.69	-0.2
111,684	-		GFF5247	0.69	-0.8
111,684	-		GFF5247	0.69	+0.2
111,719	+		GFF5247	0.72	-0.6
111,737	+		GFF5247	0.73	-0.0
111,737	+		GFF5247	0.73	+1.0
111,737	+		GFF5247	0.73	+0.5
111,737	+		GFF5247	0.73	+0.6
111,737	+		GFF5247	0.73	+0.1
111,737	+		GFF5247	0.73	+0.3
111,737	+		GFF5247	0.73	-1.4
111,737	+		GFF5247	0.73	-0.6
111,737	+		GFF5247	0.73	-1.7
111,737	+		GFF5247	0.73	-0.5
111,737	+		GFF5247	0.73	-0.2
111,737	+		GFF5247	0.73	-0.5
111,737	+		GFF5247	0.73	-1.3
111,738	-		GFF5247	0.73	-0.6
111,738	-		GFF5247	0.73	-0.2
111,738	-		GFF5247	0.73	-0.6
111,738	-		GFF5247	0.73	-0.0
111,738	-		GFF5247	0.73	-1.0