Strain Fitness in Variovorax sp. SCN45 around GFF518

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF515 and GFF516 are separated by 144 nucleotidesGFF516 and GFF517 overlap by 4 nucleotidesGFF517 and GFF518 are separated by 56 nucleotidesGFF518 and GFF519 are separated by 145 nucleotidesGFF519 and GFF520 overlap by 4 nucleotides GFF515 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 554,973 to 556,160 GFF515 GFF516 - hypothetical protein, at 556,305 to 556,580 GFF516 GFF517 - no description, at 556,577 to 556,915 GFF517 GFF518 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 556,972 to 558,504 GFF518 GFF519 - Transcriptional regulator, AcrR family, at 558,650 to 559,345 GFF519 GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868 GFF520 Position (kb) 556 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2 3at 555.991 kb on + strand, within GFF515at 555.991 kb on + strand, within GFF515at 555.992 kb on - strand, within GFF515at 556.034 kb on - strand, within GFF515at 556.034 kb on - strand, within GFF515at 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.060 kb on + strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.061 kb on - strandat 556.071 kb on + strandat 556.072 kb on - strandat 556.213 kb on + strandat 556.214 kb on - strandat 556.224 kb on + strandat 556.225 kb on - strandat 556.306 kb on + strandat 556.306 kb on + strandat 556.307 kb on - strandat 556.310 kb on + strandat 556.311 kb on - strandat 556.311 kb on - strandat 556.311 kb on - strandat 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.638 kb on + strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.639 kb on - strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.641 kb on + strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.642 kb on - strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.659 kb on + strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.660 kb on - strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.671 kb on + strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.672 kb on - strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.675 kb on + strand, within GFF517at 556.676 kb on - strand, within GFF517at 556.676 kb on - strand, within GFF517at 556.953 kb on - strandat 556.953 kb on - strandat 556.953 kb on - strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.000 kb on + strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.001 kb on - strandat 557.462 kb on + strand, within GFF518at 557.462 kb on + strand, within GFF518at 557.462 kb on + strand, within GFF518at 557.463 kb on - strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.465 kb on + strand, within GFF518at 557.466 kb on - strand, within GFF518at 557.466 kb on - strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.957 kb on + strand, within GFF518at 557.958 kb on - strand, within GFF518at 557.958 kb on - strand, within GFF518at 557.958 kb on - strand, within GFF518at 557.958 kb on - strand, within GFF518at 557.993 kb on + strand, within GFF518at 557.994 kb on - strand, within GFF518at 558.364 kb on + strandat 558.364 kb on + strandat 558.364 kb on + strandat 558.364 kb on + strandat 558.365 kb on - strandat 558.365 kb on - strandat 558.515 kb on + strandat 558.516 kb on - strandat 558.516 kb on - strandat 558.582 kb on - strandat 558.606 kb on - strandat 558.606 kb on - strandat 558.606 kb on - strandat 558.639 kb on + strandat 558.639 kb on + strandat 558.827 kb on + strand, within GFF519at 558.828 kb on - strand, within GFF519at 558.828 kb on - strand, within GFF519at 558.828 kb on - strand, within GFF519at 558.830 kb on + strand, within GFF519at 558.830 kb on + strand, within GFF519at 558.830 kb on + strand, within GFF519at 558.830 kb on + strand, within GFF519at 558.830 kb on + strand, within GFF519at 558.831 kb on - strand, within GFF519at 558.831 kb on - strand, within GFF519at 558.831 kb on - strand, within GFF519at 558.831 kb on - strand, within GFF519at 558.855 kb on - strand, within GFF519at 558.949 kb on + strand, within GFF519at 558.949 kb on + strand, within GFF519at 558.950 kb on - strand, within GFF519at 558.950 kb on - strand, within GFF519at 558.950 kb on - strand, within GFF519at 558.950 kb on - strand, within GFF519at 558.950 kb on - strand, within GFF519at 559.190 kb on + strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519at 559.191 kb on - strand, within GFF519

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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555,991 + GFF515 0.86 -1.4
555,991 + GFF515 0.86 +0.2
555,992 - GFF515 0.86 -2.7
556,034 - GFF515 0.89 -1.1
556,034 - GFF515 0.89 -0.5
556,060 + -0.7
556,060 + +0.9
556,060 + +1.8
556,060 + -1.1
556,060 + +0.2
556,060 + +2.8
556,060 + +0.6
556,060 + -0.4
556,060 + -0.0
556,060 + -0.1
556,061 - -0.2
556,061 - -1.3
556,061 - +0.2
556,061 - +0.3
556,061 - +1.2
556,061 - -0.1
556,061 - -0.1
556,061 - -1.1
556,061 - +0.5
556,061 - -0.4
556,061 - -0.7
556,071 + +0.4
556,072 - -0.2
556,213 + +0.5
556,214 - +0.1
556,224 + +0.2
556,225 - -0.3
556,306 + -0.0
556,306 + -0.7
556,307 - +0.3
556,310 + -0.8
556,311 - -0.4
556,311 - -0.9
556,311 - -1.2
556,638 + GFF517 0.18 +0.4
556,638 + GFF517 0.18 -0.5
556,638 + GFF517 0.18 -0.5
556,638 + GFF517 0.18 +0.1
556,638 + GFF517 0.18 -0.4
556,638 + GFF517 0.18 +0.4
556,638 + GFF517 0.18 +0.0
556,638 + GFF517 0.18 -1.5
556,638 + GFF517 0.18 -0.6
556,638 + GFF517 0.18 -0.2
556,639 - GFF517 0.18 -0.1
556,639 - GFF517 0.18 +0.5
556,639 - GFF517 0.18 +0.1
556,641 + GFF517 0.19 +0.4
556,641 + GFF517 0.19 +2.5
556,641 + GFF517 0.19 +0.9
556,641 + GFF517 0.19 -2.1
556,641 + GFF517 0.19 +0.7
556,641 + GFF517 0.19 -0.5
556,641 + GFF517 0.19 -0.1
556,641 + GFF517 0.19 +0.1
556,641 + GFF517 0.19 +1.0
556,641 + GFF517 0.19 +0.3
556,641 + GFF517 0.19 +0.4
556,641 + GFF517 0.19 -0.3
556,642 - GFF517 0.19 -0.8
556,642 - GFF517 0.19 -0.3
556,642 - GFF517 0.19 -1.2
556,642 - GFF517 0.19 -2.1
556,642 - GFF517 0.19 -0.7
556,642 - GFF517 0.19 -0.6
556,642 - GFF517 0.19 -0.7
556,642 - GFF517 0.19 -0.6
556,642 - GFF517 0.19 -0.2
556,642 - GFF517 0.19 -0.8
556,642 - GFF517 0.19 +0.5
556,642 - GFF517 0.19 -1.3
556,642 - GFF517 0.19 +0.5
556,642 - GFF517 0.19 -0.0
556,642 - GFF517 0.19 +0.5
556,642 - GFF517 0.19 -1.2
556,642 - GFF517 0.19 +0.2
556,659 + GFF517 0.24 +0.3
556,659 + GFF517 0.24 +0.0
556,659 + GFF517 0.24 -0.3
556,659 + GFF517 0.24 -0.8
556,659 + GFF517 0.24 -0.5
556,660 - GFF517 0.24 +0.3
556,660 - GFF517 0.24 -0.6
556,660 - GFF517 0.24 +1.6
556,671 + GFF517 0.28 -0.4
556,671 + GFF517 0.28 -0.3
556,671 + GFF517 0.28 -0.3
556,671 + GFF517 0.28 +0.2
556,671 + GFF517 0.28 -0.4
556,671 + GFF517 0.28 -0.4
556,671 + GFF517 0.28 -0.2
556,672 - GFF517 0.28 -0.7
556,672 - GFF517 0.28 +0.4
556,672 - GFF517 0.28 -0.8
556,672 - GFF517 0.28 +0.1
556,672 - GFF517 0.28 -2.3
556,672 - GFF517 0.28 -1.7
556,672 - GFF517 0.28 +0.6
556,675 + GFF517 0.29 +0.4
556,675 + GFF517 0.29 -0.3
556,675 + GFF517 0.29 -0.1
556,675 + GFF517 0.29 -0.8
556,675 + GFF517 0.29 +0.9
556,675 + GFF517 0.29 -0.8
556,676 - GFF517 0.29 -0.4
556,676 - GFF517 0.29 +1.0
556,953 - +0.0
556,953 - +0.5
556,953 - +0.1
557,000 + -2.0
557,000 + +0.0
557,000 + +0.2
557,000 + -1.9
557,000 + -1.2
557,000 + -0.5
557,000 + +0.2
557,000 + -0.0
557,000 + -0.7
557,001 - -0.5
557,001 - +0.1
557,001 - -0.3
557,001 - +0.4
557,001 - -1.8
557,001 - -0.3
557,001 - +0.5
557,001 - -0.7
557,001 - -0.7
557,001 - +0.6
557,001 - -0.4
557,001 - +1.2
557,462 + GFF518 0.32 -0.9
557,462 + GFF518 0.32 -0.0
557,462 + GFF518 0.32 +0.0
557,463 - GFF518 0.32 -0.2
557,465 + GFF518 0.32 -0.8
557,465 + GFF518 0.32 +2.2
557,465 + GFF518 0.32 -0.0
557,465 + GFF518 0.32 -0.0
557,465 + GFF518 0.32 -0.1
557,465 + GFF518 0.32 +0.4
557,465 + GFF518 0.32 -0.8
557,465 + GFF518 0.32 +0.2
557,465 + GFF518 0.32 -0.2
557,465 + GFF518 0.32 -1.6
557,466 - GFF518 0.32 -0.4
557,466 - GFF518 0.32 +0.2
557,957 + GFF518 0.64 +0.3
557,957 + GFF518 0.64 +0.9
557,957 + GFF518 0.64 +0.3
557,957 + GFF518 0.64 -0.6
557,957 + GFF518 0.64 +0.4
557,957 + GFF518 0.64 +0.1
557,958 - GFF518 0.64 +1.3
557,958 - GFF518 0.64 +0.8
557,958 - GFF518 0.64 -0.7
557,958 - GFF518 0.64 +2.0
557,993 + GFF518 0.67 -0.5
557,994 - GFF518 0.67 -2.0
558,364 + +0.5
558,364 + +0.3
558,364 + -1.6
558,364 + -0.5
558,365 - -0.1
558,365 - +0.2
558,515 + +1.0
558,516 - -0.3
558,516 - -0.2
558,582 - +0.6
558,606 - -0.5
558,606 - -0.6
558,606 - -0.0
558,639 + +0.6
558,639 + +0.2
558,827 + GFF519 0.25 +0.4
558,828 - GFF519 0.26 +0.9
558,828 - GFF519 0.26 -0.2
558,828 - GFF519 0.26 +0.4
558,830 + GFF519 0.26 -0.3
558,830 + GFF519 0.26 +0.2
558,830 + GFF519 0.26 -0.4
558,830 + GFF519 0.26 -0.2
558,830 + GFF519 0.26 +0.1
558,831 - GFF519 0.26 +0.6
558,831 - GFF519 0.26 +1.5
558,831 - GFF519 0.26 +0.6
558,831 - GFF519 0.26 -0.0
558,855 - GFF519 0.29 -1.7
558,949 + GFF519 0.43 -0.8
558,949 + GFF519 0.43 -0.1
558,950 - GFF519 0.43 +0.1
558,950 - GFF519 0.43 +0.9
558,950 - GFF519 0.43 -0.2
558,950 - GFF519 0.43 -2.0
558,950 - GFF519 0.43 -2.0
559,190 + GFF519 0.78 -1.3
559,191 - GFF519 0.78 -0.4
559,191 - GFF519 0.78 -2.2
559,191 - GFF519 0.78 -0.6
559,191 - GFF519 0.78 -0.3
559,191 - GFF519 0.78 -0.6
559,191 - GFF519 0.78 +1.2
559,191 - GFF519 0.78 -0.5

Or see this region's nucleotide sequence