Strain Fitness in Variovorax sp. SCN45 around GFF5158

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
10,479	+		GFF5157	0.46	-0.5
10,479	+		GFF5157	0.46	-0.2
10,479	+		GFF5157	0.46	+2.0
10,480	-		GFF5157	0.46	+1.4
10,480	-		GFF5157	0.46	-0.5
10,480	-		GFF5157	0.46	-0.1
10,480	-		GFF5157	0.46	-1.4
10,480	-		GFF5157	0.46	+0.3
10,539	+		GFF5157	0.49	-1.4
10,540	-		GFF5157	0.50	+0.6
10,540	-		GFF5157	0.50	-0.7
10,540	-		GFF5157	0.50	-0.2
10,540	-		GFF5157	0.50	+0.0
10,540	-		GFF5157	0.50	-1.0
10,540	-		GFF5157	0.50	-0.5
10,540	-		GFF5157	0.50	-0.5
10,614	+		GFF5157	0.54	-0.2
10,615	-		GFF5157	0.54	+0.0
10,620	+		GFF5157	0.54	-0.3
10,620	+		GFF5157	0.54	-1.2
10,620	+		GFF5157	0.54	-0.6
10,621	-		GFF5157	0.54	-0.3
10,621	-		GFF5157	0.54	-0.8
10,621	-		GFF5157	0.54	-0.4
10,698	+		GFF5157	0.58	+0.1
10,699	-		GFF5157	0.58	+0.6
10,699	-		GFF5157	0.58	+0.0
10,746	+		GFF5157	0.61	-0.2
10,747	-		GFF5157	0.61	-1.4
10,747	-		GFF5157	0.61	+0.6
10,747	-		GFF5157	0.61	-0.4
10,789	-		GFF5157	0.63	+0.6
10,872	+		GFF5157	0.67	+1.0
10,872	+		GFF5157	0.67	-0.4
10,872	+		GFF5157	0.67	-1.7
10,872	+		GFF5157	0.67	-0.1
10,872	+		GFF5157	0.67	-0.8
10,873	-		GFF5157	0.67	-0.4
10,873	-		GFF5157	0.67	+0.1
10,873	-		GFF5157	0.67	-0.1
10,873	-		GFF5157	0.67	-1.0
10,873	-		GFF5157	0.67	-0.3
10,873	-		GFF5157	0.67	-0.4
10,873	-		GFF5157	0.67	-0.6
10,962	+		GFF5157	0.72	+0.1
10,962	+		GFF5157	0.72	+0.2
10,963	-		GFF5157	0.72	+0.0
10,963	-		GFF5157	0.72	-0.3
10,963	-		GFF5157	0.72	+0.2
10,963	-		GFF5157	0.72	-0.5
11,115	+		GFF5157	0.80	+0.0
11,115	+		GFF5157	0.80	-0.5
11,115	+		GFF5157	0.80	+0.2
11,116	-		GFF5157	0.80	-0.7
11,116	-		GFF5157	0.80	-0.8
11,116	-		GFF5157	0.80	+2.1
11,202	+		GFF5157	0.85	-0.9
11,202	+		GFF5157	0.85	-0.7
11,202	+		GFF5157	0.85	-0.5
11,202	+		GFF5157	0.85	-0.4
11,202	+		GFF5157	0.85	-1.7
11,202	+		GFF5157	0.85	+0.7
11,202	+		GFF5157	0.85	-0.7
11,202	+		GFF5157	0.85	-3.0
11,203	-		GFF5157	0.85	+0.1
11,203	-		GFF5157	0.85	-0.2
11,203	-		GFF5157	0.85	-1.1
11,203	-		GFF5157	0.85	-0.5
11,203	-		GFF5157	0.85	-2.1
11,355	+				+0.4
11,355	+				+0.1
11,355	+				-0.4
11,355	+				-0.2
11,355	+				-0.7
11,356	-				+0.6
11,356	-				+1.4
11,567	+		GFF5158	0.11	-1.4
11,567	+		GFF5158	0.11	-2.9
11,567	+		GFF5158	0.11	-1.7
11,568	-		GFF5158	0.11	-5.0
11,568	-		GFF5158	0.11	-3.8
12,201	+		GFF5158	0.88	-2.2
12,201	+		GFF5158	0.88	-3.4
12,202	-		GFF5158	0.88	-2.3
12,202	-		GFF5158	0.88	-3.7
12,202	-		GFF5158	0.88	-5.7
12,202	-		GFF5158	0.88	-1.4
12,292	+				-0.7
12,292	+				+0.1
12,292	+				+0.1
12,292	+				-0.4
12,292	+				-1.2
12,292	+				-0.0
12,293	-				+0.4