Strain Fitness in Variovorax sp. SCN45 around GFF5137

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5136 and GFF5137 are separated by 1 nucleotidesGFF5137 and GFF5138 are separated by 106 nucleotidesGFF5138 and GFF5139 are separated by 104 nucleotides GFF5136 - Putative DNA helicase, at 238,497 to 243,143 GFF5136 GFF5137 - no description, at 243,145 to 243,342 GFF5137 GFF5138 - no description, at 243,449 to 243,592 GFF5138 GFF5139 - no description, at 243,697 to 244,518 GFF5139 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.254 kb on + strand, within GFF5136at 242.551 kb on + strand, within GFF5136at 242.552 kb on - strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.634 kb on + strand, within GFF5136at 242.635 kb on - strand, within GFF5136at 242.653 kb on + strand, within GFF5136at 242.654 kb on - strand, within GFF5136at 242.654 kb on - strand, within GFF5136at 242.716 kb on + strandat 242.717 kb on - strandat 242.717 kb on - strandat 243.039 kb on + strandat 243.040 kb on - strandat 243.040 kb on - strandat 243.040 kb on - strandat 243.106 kb on + strandat 243.106 kb on + strandat 243.106 kb on + strandat 243.107 kb on - strandat 243.107 kb on - strandat 243.322 kb on + strand, within GFF5137at 243.322 kb on + strand, within GFF5137at 243.323 kb on - strandat 243.323 kb on - strandat 243.323 kb on - strandat 243.323 kb on - strandat 243.404 kb on + strandat 243.404 kb on + strandat 243.405 kb on - strandat 243.405 kb on - strandat 243.406 kb on + strandat 243.407 kb on - strandat 243.413 kb on + strandat 243.414 kb on - strandat 243.419 kb on + strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.426 kb on + strandat 243.427 kb on - strandat 243.427 kb on - strandat 243.427 kb on - strandat 243.455 kb on + strandat 243.456 kb on - strandat 243.610 kb on - strandat 243.610 kb on - strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.732 kb on - strandat 244.258 kb on + strand, within GFF5139at 244.259 kb on - strand, within GFF5139at 244.259 kb on - strand, within GFF5139at 244.267 kb on + strand, within GFF5139at 244.267 kb on + strand, within GFF5139at 244.267 kb on + strand, within GFF5139at 244.267 kb on + strand, within GFF5139at 244.270 kb on + strand, within GFF5139at 244.270 kb on + strand, within GFF5139at 244.270 kb on + strand, within GFF5139at 244.270 kb on + strand, within GFF5139at 244.270 kb on + strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.271 kb on - strand, within GFF5139at 244.295 kb on + strand, within GFF5139at 244.296 kb on - strand, within GFF5139at 244.296 kb on - strand, within GFF5139at 244.296 kb on - strand, within GFF5139at 244.296 kb on - strand, within GFF5139at 244.296 kb on - strand, within GFF5139at 244.324 kb on + strand, within GFF5139at 244.325 kb on - strand, within GFF5139at 244.325 kb on - strand, within GFF5139

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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242,254 + GFF5136 0.81 -0.0
242,551 + GFF5136 0.87 +0.4
242,552 - GFF5136 0.87 +0.0
242,555 + GFF5136 0.87 -0.9
242,555 + GFF5136 0.87 -2.3
242,555 + GFF5136 0.87 -0.4
242,555 + GFF5136 0.87 -0.2
242,555 + GFF5136 0.87 +0.5
242,555 + GFF5136 0.87 +1.0
242,555 + GFF5136 0.87 +0.4
242,555 + GFF5136 0.87 -0.6
242,556 - GFF5136 0.87 -1.8
242,556 - GFF5136 0.87 -0.5
242,556 - GFF5136 0.87 -0.3
242,556 - GFF5136 0.87 +2.7
242,634 + GFF5136 0.89 -0.4
242,635 - GFF5136 0.89 +0.2
242,653 + GFF5136 0.89 -0.8
242,654 - GFF5136 0.89 +0.5
242,654 - GFF5136 0.89 +0.7
242,716 + +0.9
242,717 - +1.2
242,717 - +0.0
243,039 + +0.2
243,040 - +0.0
243,040 - -0.3
243,040 - +0.3
243,106 + -1.4
243,106 + +1.6
243,106 + -0.2
243,107 - -0.3
243,107 - -0.7
243,322 + GFF5137 0.89 -0.4
243,322 + GFF5137 0.89 -0.6
243,323 - -1.1
243,323 - -1.1
243,323 - -1.0
243,323 - -0.0
243,404 + +1.4
243,404 + -0.1
243,405 - -2.0
243,405 - +0.6
243,406 + +0.7
243,407 - -2.2
243,413 + +0.2
243,414 - +0.7
243,419 + +0.1
243,420 - -0.4
243,420 - -0.2
243,420 - +1.7
243,420 - -1.6
243,420 - -1.1
243,426 + +0.1
243,427 - -0.3
243,427 - -2.2
243,427 - -0.1
243,455 + +0.2
243,456 - +0.4
243,610 - -0.7
243,610 - -1.8
243,731 + +0.7
243,731 + -0.2
243,731 + +1.1
243,731 + -0.4
243,731 + -0.0
243,732 - +0.1
244,258 + GFF5139 0.68 +0.7
244,259 - GFF5139 0.68 +1.2
244,259 - GFF5139 0.68 +0.2
244,267 + GFF5139 0.69 +1.7
244,267 + GFF5139 0.69 -1.8
244,267 + GFF5139 0.69 -0.6
244,267 + GFF5139 0.69 -0.5
244,270 + GFF5139 0.70 +0.2
244,270 + GFF5139 0.70 -0.9
244,270 + GFF5139 0.70 +0.0
244,270 + GFF5139 0.70 +0.5
244,270 + GFF5139 0.70 +0.6
244,271 - GFF5139 0.70 +0.7
244,271 - GFF5139 0.70 +0.0
244,271 - GFF5139 0.70 -0.6
244,271 - GFF5139 0.70 -0.3
244,271 - GFF5139 0.70 +0.5
244,271 - GFF5139 0.70 +0.0
244,271 - GFF5139 0.70 -0.8
244,295 + GFF5139 0.73 -0.3
244,296 - GFF5139 0.73 +0.7
244,296 - GFF5139 0.73 -1.0
244,296 - GFF5139 0.73 +1.2
244,296 - GFF5139 0.73 -0.8
244,296 - GFF5139 0.73 +0.4
244,324 + GFF5139 0.76 -1.4
244,325 - GFF5139 0.76 +0.4
244,325 - GFF5139 0.76 +0.5

Or see this region's nucleotide sequence