Strain Fitness in Variovorax sp. SCN45 around GFF5122

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5121 and GFF5122 are separated by 216 nucleotidesGFF5122 and GFF5123 are separated by 67 nucleotidesGFF5123 and GFF5124 are separated by 72 nucleotides GFF5121 - Probable signal peptide protein, at 222,758 to 223,624 GFF5121 GFF5122 - AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination, at 223,841 to 224,095 GFF5122 GFF5123 - no description, at 224,163 to 224,339 GFF5123 GFF5124 - Putative transposase InsK for insertion sequence element IS150, at 224,412 to 224,945 GFF5124 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 222.867 kb on + strand, within GFF5121at 222.868 kb on - strand, within GFF5121at 222.868 kb on - strand, within GFF5121at 222.931 kb on - strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.948 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 222.957 kb on + strand, within GFF5121at 223.002 kb on + strand, within GFF5121at 223.050 kb on + strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.051 kb on - strand, within GFF5121at 223.122 kb on + strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.123 kb on - strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.146 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.182 kb on + strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.183 kb on - strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.197 kb on + strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.198 kb on - strand, within GFF5121at 223.233 kb on + strand, within GFF5121at 223.234 kb on - strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.239 kb on + strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.240 kb on - strand, within GFF5121at 223.287 kb on + strand, within GFF5121at 223.296 kb on + strand, within GFF5121at 223.360 kb on - strand, within GFF5121at 223.360 kb on - strand, within GFF5121at 223.360 kb on - strand, within GFF5121at 223.360 kb on - strand, within GFF5121at 223.360 kb on - strand, within GFF5121at 223.383 kb on + strand, within GFF5121at 223.384 kb on - strand, within GFF5121at 223.431 kb on + strand, within GFF5121at 223.431 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 224.006 kb on - strand, within GFF5122at 224.129 kb on + strandat 224.129 kb on + strandat 224.129 kb on + strandat 224.129 kb on + strandat 224.130 kb on - strandat 224.130 kb on - strandat 224.192 kb on - strand, within GFF5123at 224.192 kb on - strand, within GFF5123at 224.240 kb on + strand, within GFF5123at 224.296 kb on - strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.337 kb on + strandat 224.337 kb on + strandat 224.337 kb on + strandat 224.338 kb on - strandat 224.338 kb on - strandat 224.338 kb on - strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.452 kb on - strandat 224.452 kb on - strandat 224.452 kb on - strandat 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.756 kb on + strand, within GFF5124at 224.756 kb on + strand, within GFF5124at 224.757 kb on - strand, within GFF5124at 224.844 kb on + strand, within GFF5124at 224.844 kb on + strand, within GFF5124at 224.866 kb on + strand, within GFF5124at 224.867 kb on - strand, within GFF5124at 224.867 kb on - strand, within GFF5124at 224.873 kb on - strand, within GFF5124at 224.880 kb on + strand, within GFF5124at 224.880 kb on + strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.887 kb on + strand, within GFF5124at 224.888 kb on - strand, within GFF5124at 225.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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222,867 + GFF5121 0.13 -0.4
222,868 - GFF5121 0.13 +2.2
222,868 - GFF5121 0.13 -0.6
222,931 - GFF5121 0.20 -0.7
222,948 + GFF5121 0.22 +0.2
222,948 + GFF5121 0.22 -1.0
222,948 + GFF5121 0.22 +0.7
222,948 + GFF5121 0.22 -0.5
222,948 + GFF5121 0.22 -0.4
222,957 + GFF5121 0.23 -0.7
222,957 + GFF5121 0.23 +0.2
222,957 + GFF5121 0.23 +0.6
222,957 + GFF5121 0.23 +0.2
223,002 + GFF5121 0.28 -1.2
223,050 + GFF5121 0.34 -0.3
223,051 - GFF5121 0.34 -0.6
223,051 - GFF5121 0.34 +0.5
223,051 - GFF5121 0.34 -0.3
223,122 + GFF5121 0.42 -1.9
223,123 - GFF5121 0.42 -0.5
223,123 - GFF5121 0.42 +0.2
223,123 - GFF5121 0.42 +0.4
223,123 - GFF5121 0.42 +0.7
223,123 - GFF5121 0.42 +0.2
223,146 + GFF5121 0.45 +0.5
223,146 + GFF5121 0.45 -0.8
223,146 + GFF5121 0.45 +0.7
223,146 + GFF5121 0.45 -0.1
223,146 + GFF5121 0.45 -0.4
223,146 + GFF5121 0.45 -0.5
223,182 + GFF5121 0.49 -1.2
223,182 + GFF5121 0.49 -0.1
223,182 + GFF5121 0.49 -0.6
223,183 - GFF5121 0.49 -0.7
223,183 - GFF5121 0.49 +0.4
223,183 - GFF5121 0.49 -0.9
223,183 - GFF5121 0.49 -0.4
223,197 + GFF5121 0.51 -0.4
223,197 + GFF5121 0.51 +0.5
223,197 + GFF5121 0.51 -0.3
223,198 - GFF5121 0.51 -1.2
223,198 - GFF5121 0.51 -0.4
223,198 - GFF5121 0.51 -0.0
223,233 + GFF5121 0.55 -0.3
223,234 - GFF5121 0.55 -0.6
223,239 + GFF5121 0.55 -1.0
223,239 + GFF5121 0.55 +1.7
223,239 + GFF5121 0.55 -1.2
223,239 + GFF5121 0.55 -1.4
223,239 + GFF5121 0.55 -0.1
223,239 + GFF5121 0.55 -1.2
223,239 + GFF5121 0.55 +0.2
223,239 + GFF5121 0.55 -1.1
223,239 + GFF5121 0.55 -3.0
223,239 + GFF5121 0.55 -0.1
223,239 + GFF5121 0.55 -1.1
223,240 - GFF5121 0.56 -0.5
223,240 - GFF5121 0.56 +0.6
223,240 - GFF5121 0.56 +0.7
223,240 - GFF5121 0.56 +0.3
223,240 - GFF5121 0.56 +0.2
223,240 - GFF5121 0.56 -0.7
223,240 - GFF5121 0.56 +0.2
223,240 - GFF5121 0.56 -0.4
223,240 - GFF5121 0.56 +0.2
223,240 - GFF5121 0.56 -0.3
223,240 - GFF5121 0.56 -0.1
223,240 - GFF5121 0.56 -0.8
223,240 - GFF5121 0.56 -1.1
223,240 - GFF5121 0.56 +0.2
223,240 - GFF5121 0.56 -1.8
223,240 - GFF5121 0.56 -0.4
223,240 - GFF5121 0.56 -0.8
223,287 + GFF5121 0.61 -0.2
223,296 + GFF5121 0.62 -0.2
223,360 - GFF5121 0.69 +0.2
223,360 - GFF5121 0.69 -1.1
223,360 - GFF5121 0.69 -1.1
223,360 - GFF5121 0.69 +0.2
223,360 - GFF5121 0.69 -0.1
223,383 + GFF5121 0.72 +0.7
223,384 - GFF5121 0.72 +0.3
223,431 + GFF5121 0.78 -1.1
223,431 + GFF5121 0.78 -0.6
223,476 + GFF5121 0.83 -2.2
223,476 + GFF5121 0.83 +0.9
223,476 + GFF5121 0.83 -2.1
223,477 - GFF5121 0.83 +0.6
223,477 - GFF5121 0.83 -0.1
223,477 - GFF5121 0.83 +0.7
223,696 + +0.5
223,696 + -0.1
223,696 + +0.0
223,696 + -0.4
223,696 + -0.6
223,697 - -1.2
223,697 - +0.7
223,697 - +0.5
223,697 - -0.7
223,697 - -0.5
223,697 - -1.0
223,697 - -1.6
224,006 - GFF5122 0.65 -0.9
224,129 + +1.4
224,129 + -1.1
224,129 + +0.0
224,129 + +0.8
224,130 - -0.1
224,130 - +0.4
224,192 - GFF5123 0.16 -0.5
224,192 - GFF5123 0.16 -1.1
224,240 + GFF5123 0.44 +0.0
224,296 - GFF5123 0.75 +1.6
224,304 + GFF5123 0.80 +1.0
224,304 + GFF5123 0.80 -0.7
224,304 + GFF5123 0.80 -1.0
224,304 + GFF5123 0.80 -1.3
224,304 + GFF5123 0.80 -0.0
224,304 + GFF5123 0.80 +0.7
224,304 + GFF5123 0.80 -0.4
224,304 + GFF5123 0.80 -0.5
224,305 - GFF5123 0.80 -1.2
224,305 - GFF5123 0.80 -1.0
224,305 - GFF5123 0.80 -1.3
224,337 + -0.5
224,337 + -0.1
224,337 + -2.7
224,338 - +0.0
224,338 - -0.4
224,338 - -0.8
224,451 + +0.6
224,451 + -0.4
224,451 + +0.0
224,451 + -0.3
224,451 + +0.7
224,451 + -1.0
224,451 + -0.3
224,451 + -0.3
224,451 + +2.7
224,452 - +0.3
224,452 - +1.2
224,452 - -0.3
224,571 + GFF5124 0.30 -2.0
224,571 + GFF5124 0.30 +0.2
224,571 + GFF5124 0.30 +0.6
224,571 + GFF5124 0.30 -1.0
224,571 + GFF5124 0.30 +0.7
224,571 + GFF5124 0.30 +0.2
224,571 + GFF5124 0.30 -3.0
224,571 + GFF5124 0.30 -0.1
224,571 + GFF5124 0.30 -0.6
224,571 + GFF5124 0.30 -0.3
224,571 + GFF5124 0.30 -0.4
224,572 - GFF5124 0.30 -0.7
224,572 - GFF5124 0.30 -0.3
224,572 - GFF5124 0.30 -0.6
224,572 - GFF5124 0.30 -0.2
224,756 + GFF5124 0.64 -2.3
224,756 + GFF5124 0.64 -1.8
224,757 - GFF5124 0.65 +0.0
224,844 + GFF5124 0.81 +0.3
224,844 + GFF5124 0.81 -0.2
224,866 + GFF5124 0.85 -1.5
224,867 - GFF5124 0.85 -0.4
224,867 - GFF5124 0.85 -0.4
224,873 - GFF5124 0.86 +0.0
224,880 + GFF5124 0.88 +0.7
224,880 + GFF5124 0.88 +0.3
224,881 - GFF5124 0.88 -1.5
224,881 - GFF5124 0.88 +0.9
224,881 - GFF5124 0.88 -0.1
224,881 - GFF5124 0.88 +0.0
224,881 - GFF5124 0.88 +0.4
224,887 + GFF5124 0.89 -0.2
224,888 - GFF5124 0.89 +0.3
225,073 - +0.2

Or see this region's nucleotide sequence