Strain Fitness in Variovorax sp. SCN45 around GFF5006

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
105,043	-				-0.4
105,062	+				-0.8
105,062	+				+1.1
105,062	+				-0.6
105,062	+				-0.8
105,062	+				+0.5
105,062	+				-1.1
105,062	+				+0.1
105,062	+				+0.6
105,062	+				+0.1
105,062	+				-1.7
105,062	+				-0.8
105,063	-				-0.4
105,063	-				-0.5
105,063	-				+1.6
105,063	-				-0.8
105,063	-				+0.2
105,063	-				-0.2
105,063	-				+1.7
105,063	-				-0.9
105,063	-				+3.7
105,063	-				+0.3
105,064	+				-0.8
105,064	+				-1.5
105,064	+				-0.6
105,064	+				-0.1
105,064	+				+0.7
105,064	+				-0.2
105,064	+				-0.2
105,064	+				-2.1
105,064	+				-1.1
105,064	+				+0.0
105,064	+				+1.7
105,064	+				+0.5
105,065	-				+1.0
105,065	-				+0.6
105,065	-				+0.7
105,065	-				-0.7
105,065	-				+0.9
105,065	-				+0.2
105,065	-				+0.3
105,065	-				-0.5
105,065	-				+0.1
105,065	-				-1.1
105,065	-				-0.8
105,065	-				-0.3
105,065	-				-0.1
105,065	-				-0.7
105,065	-				+0.9
105,065	-				-0.4
105,065	-				+0.3
105,091	+				-0.2
105,091	+				-0.2
105,091	+				+0.6
105,091	+				-0.6
105,092	-				+0.0
105,092	-				+0.4
105,092	-				-0.5
105,095	+				-1.6
105,095	+				-0.4
105,095	+				-0.0
105,096	-				+0.1
105,096	-				-0.1
105,096	-				+0.2
105,096	-				+0.0
105,299	+		GFF5005	0.34	-0.4
105,299	+		GFF5005	0.34	-0.5
105,300	-		GFF5005	0.34	+0.4
105,326	+		GFF5005	0.39	-0.9
105,326	+		GFF5005	0.39	-1.3
105,326	+		GFF5005	0.39	-0.5
105,326	+		GFF5005	0.39	-0.3
105,326	+		GFF5005	0.39	+1.0
105,326	+		GFF5005	0.39	-0.7
105,326	+		GFF5005	0.39	-0.5
105,326	+		GFF5005	0.39	-0.5
105,326	+		GFF5005	0.39	-1.7
105,327	-		GFF5005	0.39	-2.5
105,327	-		GFF5005	0.39	+0.1
105,327	-		GFF5005	0.39	-1.7
105,327	-		GFF5005	0.39	-0.8
105,327	-		GFF5005	0.39	+0.7
105,327	-		GFF5005	0.39	-1.1
105,327	-		GFF5005	0.39	-2.0
105,327	-		GFF5005	0.39	+2.3
105,327	-		GFF5005	0.39	+0.3
105,327	-		GFF5005	0.39	-0.3
105,327	-		GFF5005	0.39	-0.2
105,327	-		GFF5005	0.39	+0.2
105,563	-		GFF5005	0.83	+0.0
105,563	-		GFF5005	0.83	-0.0
105,930	+		GFF5006	0.12	+0.2
105,930	+		GFF5006	0.12	-0.0
105,930	+		GFF5006	0.12	+1.1
105,930	+		GFF5006	0.12	+0.4
105,930	+		GFF5006	0.12	+0.2
105,930	+		GFF5006	0.12	-0.3
105,930	+		GFF5006	0.12	+0.1
105,930	+		GFF5006	0.12	+0.2
105,930	+		GFF5006	0.12	+0.7
105,930	+		GFF5006	0.12	+0.0
105,931	-		GFF5006	0.12	+0.2
105,931	-		GFF5006	0.12	-0.1
105,931	-		GFF5006	0.12	+1.5
105,931	-		GFF5006	0.12	-0.7
105,931	-		GFF5006	0.12	+0.0
105,931	-		GFF5006	0.12	+0.2
105,931	-		GFF5006	0.12	+0.2
105,931	-		GFF5006	0.12	-0.3
105,931	-		GFF5006	0.12	-0.1
105,931	-		GFF5006	0.12	-0.1
105,931	-		GFF5006	0.12	+0.7
105,931	-		GFF5006	0.12	+0.3
106,010	+		GFF5006	0.19	-0.2
106,194	+		GFF5006	0.35	+0.6
106,194	+		GFF5006	0.35	+0.3
106,194	+		GFF5006	0.35	+0.6
106,194	+		GFF5006	0.35	-1.0
106,194	+		GFF5006	0.35	-0.2
106,194	+		GFF5006	0.35	-0.1
106,194	+		GFF5006	0.35	-0.4
106,194	+		GFF5006	0.35	+0.9
106,194	+		GFF5006	0.35	+1.7
106,195	-		GFF5006	0.35	-1.3
106,195	-		GFF5006	0.35	+0.4
106,326	+		GFF5006	0.46	+0.2
106,327	-		GFF5006	0.46	+0.0
106,327	-		GFF5006	0.46	-0.1
106,327	-		GFF5006	0.46	+0.3
106,327	-		GFF5006	0.46	+0.4
106,333	-		GFF5006	0.47	-0.4
106,333	-		GFF5006	0.47	-0.3
106,333	-		GFF5006	0.47	+0.5
106,467	+		GFF5006	0.58	-1.2
106,564	-		GFF5006	0.67	+0.7
106,623	+		GFF5006	0.72	-0.6
106,623	+		GFF5006	0.72	+0.2
106,623	+		GFF5006	0.72	-0.1
106,623	+		GFF5006	0.72	-1.3
106,624	-		GFF5006	0.72	+0.6
106,624	-		GFF5006	0.72	+1.2
106,833	-		GFF5006	0.90	-0.5
107,029	+				+0.0
107,029	+				-0.5
107,029	+				-0.1
107,029	+				-1.6
107,029	+				+0.4
107,029	+				-0.8
107,029	+				+1.7
107,029	+				-0.5
107,029	+				-1.3
107,029	+				-1.0
107,030	-				+0.1
107,030	-				+0.6
107,030	-				-1.4
107,030	-				-0.1
107,030	-				-0.4
107,030	-				-0.1
107,074	+				-0.4
107,074	+				+1.7
107,074	+				-0.3
107,074	+				+0.1
107,075	-				-0.5
107,075	-				-0.1
107,461	-		GFF5007	0.39	+0.1
107,611	+		GFF5007	0.51	+0.6
107,611	+		GFF5007	0.51	-0.9
107,611	+		GFF5007	0.51	+0.4
107,612	-		GFF5007	0.51	-0.6
107,612	-		GFF5007	0.51	-0.0
107,612	-		GFF5007	0.51	-1.5
107,612	-		GFF5007	0.51	-1.1
107,836	+		GFF5007	0.70	+0.2
107,836	+		GFF5007	0.70	-2.6
107,836	+		GFF5007	0.70	+0.3
107,837	-		GFF5007	0.70	-1.3
107,837	-		GFF5007	0.70	+0.5
107,837	-		GFF5007	0.70	-0.4