Strain Fitness in Variovorax sp. SCN45 around GFF4959

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
58,885	+				-0.1
58,886	-				+2.3
58,886	-				+0.2
58,886	-				-0.6
59,361	-		GFF4958	0.52	-1.2
59,556	+		GFF4958	0.73	+0.2
59,557	-		GFF4958	0.73	-0.3
59,557	-		GFF4958	0.73	-0.3
59,557	-		GFF4958	0.73	-0.1
59,744	+				-0.6
59,745	-				-1.0
59,745	-				+0.1
59,745	-				+0.6
59,745	-				-2.5
59,824	+				-0.6
59,824	+				-1.5
59,825	-				-1.1
59,899	+				-0.6
59,899	+				+0.7
59,899	+				-1.0
60,019	+		GFF4959	0.22	+1.0
60,145	+		GFF4959	0.35	-0.4
60,146	-		GFF4959	0.35	-0.2
60,184	+		GFF4959	0.38	+0.3
60,185	-		GFF4959	0.39	+0.9
60,230	-		GFF4959	0.43	-0.6