Strain Fitness in Variovorax sp. SCN45 around GFF4948

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4947 and GFF4948 are separated by 180 nucleotidesGFF4948 and GFF4949 overlap by 4 nucleotides GFF4947 - Erythritol kinase EryA (EC 2.7.1.27), at 42,178 to 43,665 GFF4947 GFF4948 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 43,846 to 44,892 GFF4948 GFF4949 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 44,889 to 46,412 GFF4949 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.175 kb on + strand, within GFF4947at 43.175 kb on + strand, within GFF4947at 43.175 kb on + strand, within GFF4947at 43.175 kb on + strand, within GFF4947at 43.176 kb on - strand, within GFF4947at 43.403 kb on + strand, within GFF4947at 43.403 kb on + strand, within GFF4947at 43.403 kb on + strand, within GFF4947at 43.403 kb on + strand, within GFF4947at 43.403 kb on + strand, within GFF4947at 43.404 kb on - strand, within GFF4947at 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.720 kb on + strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.721 kb on - strandat 43.743 kb on + strandat 43.743 kb on + strandat 43.744 kb on - strandat 43.855 kb on - strandat 43.975 kb on + strand, within GFF4948at 43.976 kb on - strand, within GFF4948at 43.976 kb on - strand, within GFF4948at 44.008 kb on + strand, within GFF4948at 44.009 kb on - strand, within GFF4948at 44.009 kb on - strand, within GFF4948at 44.023 kb on + strand, within GFF4948at 44.024 kb on - strand, within GFF4948at 44.090 kb on - strand, within GFF4948at 44.479 kb on + strand, within GFF4948at 44.480 kb on - strand, within GFF4948at 44.692 kb on + strand, within GFF4948at 44.692 kb on + strand, within GFF4948at 44.692 kb on + strand, within GFF4948at 44.692 kb on + strand, within GFF4948at 44.692 kb on + strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.693 kb on - strand, within GFF4948at 44.842 kb on + strandat 44.854 kb on + strandat 44.855 kb on - strandat 44.855 kb on - strandat 44.855 kb on - strandat 44.855 kb on - strandat 45.241 kb on - strand, within GFF4949at 45.483 kb on + strand, within GFF4949at 45.483 kb on + strand, within GFF4949at 45.484 kb on - strand, within GFF4949at 45.484 kb on - strand, within GFF4949at 45.484 kb on - strand, within GFF4949at 45.509 kb on - strand, within GFF4949at 45.630 kb on + strand, within GFF4949at 45.630 kb on + strand, within GFF4949at 45.630 kb on + strand, within GFF4949at 45.630 kb on + strand, within GFF4949at 45.630 kb on + strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.631 kb on - strand, within GFF4949at 45.634 kb on - strand, within GFF4949at 45.634 kb on - strand, within GFF4949at 45.867 kb on + strand, within GFF4949at 45.867 kb on + strand, within GFF4949at 45.868 kb on - strand, within GFF4949

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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43,175 + GFF4947 0.67 +0.2
43,175 + GFF4947 0.67 -0.4
43,175 + GFF4947 0.67 -0.5
43,175 + GFF4947 0.67 -0.4
43,176 - GFF4947 0.67 +1.0
43,403 + GFF4947 0.82 -1.4
43,403 + GFF4947 0.82 -0.2
43,403 + GFF4947 0.82 +0.4
43,403 + GFF4947 0.82 +0.0
43,403 + GFF4947 0.82 -0.8
43,404 - GFF4947 0.82 -1.3
43,720 + +0.7
43,720 + -0.2
43,720 + -0.6
43,720 + -0.6
43,720 + -1.1
43,720 + +0.2
43,720 + +0.4
43,720 + +0.6
43,720 + -0.6
43,720 + -1.2
43,721 - -0.2
43,721 - +1.5
43,721 - -1.1
43,721 - +0.2
43,721 - -0.1
43,721 - -1.7
43,721 - +0.3
43,721 - -0.4
43,721 - -0.2
43,721 - -0.3
43,721 - -0.4
43,721 - +2.1
43,721 - -0.1
43,743 + -0.2
43,743 + -0.9
43,744 - +0.2
43,855 - -0.5
43,975 + GFF4948 0.12 +0.2
43,976 - GFF4948 0.12 -0.1
43,976 - GFF4948 0.12 +0.2
44,008 + GFF4948 0.15 -1.2
44,009 - GFF4948 0.16 -1.4
44,009 - GFF4948 0.16 -0.2
44,023 + GFF4948 0.17 -0.3
44,024 - GFF4948 0.17 -0.7
44,090 - GFF4948 0.23 -0.4
44,479 + GFF4948 0.60 -0.8
44,480 - GFF4948 0.61 +1.0
44,692 + GFF4948 0.81 +0.2
44,692 + GFF4948 0.81 +0.2
44,692 + GFF4948 0.81 -1.1
44,692 + GFF4948 0.81 -0.2
44,692 + GFF4948 0.81 -0.3
44,693 - GFF4948 0.81 -0.4
44,693 - GFF4948 0.81 -1.3
44,693 - GFF4948 0.81 +0.1
44,693 - GFF4948 0.81 -1.6
44,693 - GFF4948 0.81 -1.3
44,693 - GFF4948 0.81 +0.1
44,842 + +1.1
44,854 + +0.6
44,855 - +0.2
44,855 - +0.0
44,855 - -0.8
44,855 - +0.0
45,241 - GFF4949 0.23 +0.4
45,483 + GFF4949 0.39 -0.6
45,483 + GFF4949 0.39 +0.1
45,484 - GFF4949 0.39 -0.1
45,484 - GFF4949 0.39 -0.5
45,484 - GFF4949 0.39 +0.4
45,509 - GFF4949 0.41 -0.5
45,630 + GFF4949 0.49 +1.5
45,630 + GFF4949 0.49 -1.3
45,630 + GFF4949 0.49 +1.3
45,630 + GFF4949 0.49 +0.1
45,630 + GFF4949 0.49 -0.1
45,631 - GFF4949 0.49 -3.3
45,631 - GFF4949 0.49 +0.2
45,631 - GFF4949 0.49 -0.1
45,631 - GFF4949 0.49 -0.0
45,631 - GFF4949 0.49 +0.9
45,631 - GFF4949 0.49 -0.1
45,634 - GFF4949 0.49 +1.2
45,634 - GFF4949 0.49 +0.3
45,867 + GFF4949 0.64 -0.2
45,867 + GFF4949 0.64 +0.1
45,868 - GFF4949 0.64 +0.0

Or see this region's nucleotide sequence