Strain Fitness in Variovorax sp. SCN45 around GFF4813

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4812 and GFF4813 are separated by 360 nucleotidesGFF4813 and GFF4814 are separated by 8 nucleotides GFF4812 - no description, at 183,389 to 183,856 GFF4812 GFF4813 - Sugar phosphate isomerases/epimerase, at 184,217 to 185,095 GFF4813 GFF4814 - Conserved hypothetical protein potentially related to ribose or hydroxymethylpyrimidine metabolism, at 185,104 to 186,291 GFF4814 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.290 kb on + strandat 183.291 kb on - strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.345 kb on - strandat 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.447 kb on + strand, within GFF4812at 183.451 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.455 kb on + strand, within GFF4812at 183.456 kb on - strand, within GFF4812at 183.456 kb on - strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.457 kb on + strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.458 kb on - strand, within GFF4812at 183.499 kb on + strand, within GFF4812at 183.657 kb on + strand, within GFF4812at 183.657 kb on + strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.658 kb on - strand, within GFF4812at 183.684 kb on - strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.695 kb on + strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.696 kb on - strand, within GFF4812at 183.740 kb on + strand, within GFF4812at 183.744 kb on - strand, within GFF4812at 183.827 kb on + strandat 183.827 kb on + strandat 183.827 kb on + strandat 183.828 kb on - strandat 183.828 kb on - strandat 183.828 kb on - strandat 183.828 kb on - strandat 184.418 kb on - strand, within GFF4813at 184.418 kb on - strand, within GFF4813at 184.437 kb on + strand, within GFF4813at 184.506 kb on + strand, within GFF4813at 184.506 kb on + strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.507 kb on - strand, within GFF4813at 184.723 kb on - strand, within GFF4813at 184.881 kb on + strand, within GFF4813at 185.306 kb on + strand, within GFF4814at 185.307 kb on - strand, within GFF4814at 185.514 kb on - strand, within GFF4814at 185.534 kb on + strand, within GFF4814at 185.534 kb on + strand, within GFF4814at 185.534 kb on + strand, within GFF4814at 185.534 kb on + strand, within GFF4814at 185.534 kb on + strand, within GFF4814at 185.535 kb on - strand, within GFF4814at 185.535 kb on - strand, within GFF4814at 185.535 kb on - strand, within GFF4814at 185.535 kb on - strand, within GFF4814at 185.769 kb on - strand, within GFF4814at 185.780 kb on + strand, within GFF4814

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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183,290 + -0.9
183,291 - -0.2
183,344 + -0.9
183,344 + -0.7
183,345 - +0.5
183,447 + GFF4812 0.12 +0.2
183,447 + GFF4812 0.12 +0.2
183,447 + GFF4812 0.12 +1.3
183,447 + GFF4812 0.12 -1.4
183,451 + GFF4812 0.13 -2.0
183,455 + GFF4812 0.14 +1.1
183,455 + GFF4812 0.14 -1.8
183,455 + GFF4812 0.14 -0.6
183,455 + GFF4812 0.14 -0.2
183,455 + GFF4812 0.14 +0.7
183,455 + GFF4812 0.14 -0.5
183,456 - GFF4812 0.14 +0.7
183,456 - GFF4812 0.14 -0.3
183,457 + GFF4812 0.15 +0.2
183,457 + GFF4812 0.15 -0.6
183,457 + GFF4812 0.15 +0.3
183,457 + GFF4812 0.15 -0.3
183,458 - GFF4812 0.15 +0.0
183,458 - GFF4812 0.15 -0.1
183,458 - GFF4812 0.15 -0.5
183,458 - GFF4812 0.15 +0.3
183,499 + GFF4812 0.24 -0.7
183,657 + GFF4812 0.57 -0.5
183,657 + GFF4812 0.57 +0.0
183,658 - GFF4812 0.57 -0.4
183,658 - GFF4812 0.57 +1.0
183,658 - GFF4812 0.57 -0.9
183,684 - GFF4812 0.63 -0.6
183,695 + GFF4812 0.65 -1.9
183,695 + GFF4812 0.65 +0.1
183,695 + GFF4812 0.65 -0.3
183,696 - GFF4812 0.66 -1.2
183,696 - GFF4812 0.66 +0.4
183,696 - GFF4812 0.66 -0.5
183,696 - GFF4812 0.66 -0.6
183,740 + GFF4812 0.75 +0.4
183,744 - GFF4812 0.76 +0.8
183,827 + +0.3
183,827 + -0.6
183,827 + +0.2
183,828 - -1.7
183,828 - -0.3
183,828 - -0.9
183,828 - -0.3
184,418 - GFF4813 0.23 +0.0
184,418 - GFF4813 0.23 -0.7
184,437 + GFF4813 0.25 -0.4
184,506 + GFF4813 0.33 -0.8
184,506 + GFF4813 0.33 -1.4
184,507 - GFF4813 0.33 -0.1
184,507 - GFF4813 0.33 -0.5
184,507 - GFF4813 0.33 -0.9
184,507 - GFF4813 0.33 +0.2
184,723 - GFF4813 0.58 -1.0
184,881 + GFF4813 0.76 +1.0
185,306 + GFF4814 0.17 -0.0
185,307 - GFF4814 0.17 -1.0
185,514 - GFF4814 0.35 +0.8
185,534 + GFF4814 0.36 -1.0
185,534 + GFF4814 0.36 -0.7
185,534 + GFF4814 0.36 -0.6
185,534 + GFF4814 0.36 -0.0
185,534 + GFF4814 0.36 -0.5
185,535 - GFF4814 0.36 +0.8
185,535 - GFF4814 0.36 +1.6
185,535 - GFF4814 0.36 +1.0
185,535 - GFF4814 0.36 -0.5
185,769 - GFF4814 0.56 -0.4
185,780 + GFF4814 0.57 +1.2

Or see this region's nucleotide sequence