Strain Fitness in Variovorax sp. SCN45 around GFF4792

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
161,676	+		GFF4791	0.22	+1.3
161,677	-		GFF4791	0.22	+1.3
161,677	-		GFF4791	0.22	-0.3
161,677	-		GFF4791	0.22	+0.3
161,761	-		GFF4791	0.29	+0.3
161,761	-		GFF4791	0.29	-0.5
161,865	+		GFF4791	0.38	-0.3
161,865	+		GFF4791	0.38	-0.3
161,866	-		GFF4791	0.38	-0.7
161,866	-		GFF4791	0.38	+0.8
162,060	+		GFF4791	0.53	-0.5
162,060	+		GFF4791	0.53	-0.7
162,060	+		GFF4791	0.53	+1.3
162,060	+		GFF4791	0.53	+0.1
162,060	+		GFF4791	0.53	-0.1
162,060	+		GFF4791	0.53	-2.1
162,060	+		GFF4791	0.53	+0.6
162,061	-		GFF4791	0.54	+0.3
162,061	-		GFF4791	0.54	+1.0
162,061	-		GFF4791	0.54	-1.0
162,580	-				+1.1
162,580	-				-0.6
162,752	+		GFF4792	0.33	-0.3
162,753	-		GFF4792	0.34	-1.0
162,900	-		GFF4792	0.74	-0.5
162,921	-		GFF4792	0.80	-0.5
162,921	-		GFF4792	0.80	-1.0
162,952	+		GFF4792	0.88	-1.3
162,971	+				-0.3
162,971	+				+0.2
162,971	+				-0.1
162,971	+				+0.3
162,971	+				-0.4
162,971	+				-0.6
162,971	+				+0.8
162,972	-				+0.4
162,972	-				+0.0
162,972	-				-0.7
162,972	-				-0.3
162,972	-				-0.3
162,972	-				-0.1
162,972	-				-0.1
162,972	-				-0.2
162,986	+				+0.2
162,986	+				-0.6
162,986	+				+0.1
162,986	+				-1.3
162,986	+				+1.6
162,986	+				-0.4
162,986	+				-0.2
162,986	+				-0.1
162,986	+				+0.2
162,986	+				-0.2
162,986	+				-2.7
162,986	+				-0.2
162,986	+				-0.3
162,986	+				-0.8
162,986	+				+0.1
162,986	+				-0.3
162,986	+				-1.0
162,986	+				+0.1
162,986	+				-0.2
162,986	+				-0.3
162,987	-				-1.3
162,987	-				-0.0
162,987	-				-0.2
162,987	-				+0.5
162,987	-				+0.8
162,987	-				-0.1
162,987	-				-0.5
162,987	-				+0.0
162,987	-				+0.0
162,987	-				+0.6
162,987	-				-1.6
162,987	-				+2.3
162,987	-				+0.0
162,987	-				-0.7
162,987	-				-0.4
162,987	-				+1.0
162,987	-				-0.6
162,987	-				-1.7
162,987	-				+1.0
162,987	-				+0.1
163,223	+				+0.0
163,223	+				+0.3
163,224	-				+0.4
163,224	-				-0.2
163,224	-				-0.5
163,224	-				+0.3
163,380	-		GFF4793	0.16	-0.1
163,541	+		GFF4793	0.28	+0.1
163,542	-		GFF4793	0.28	+1.1
163,553	+		GFF4793	0.29	-0.3
163,553	+		GFF4793	0.29	-0.1
163,553	+		GFF4793	0.29	+0.2
163,553	+		GFF4793	0.29	-0.4
163,583	+		GFF4793	0.31	-0.7
163,583	+		GFF4793	0.31	-0.1
163,584	-		GFF4793	0.31	-1.3
163,607	+		GFF4793	0.33	+0.8
163,607	+		GFF4793	0.33	-0.3
163,607	+		GFF4793	0.33	-1.3
163,607	+		GFF4793	0.33	+0.9
163,608	-		GFF4793	0.33	+2.3
163,655	+		GFF4793	0.36	+0.4
163,655	+		GFF4793	0.36	-1.0
163,655	+		GFF4793	0.36	-0.4
163,655	+		GFF4793	0.36	+0.4
163,781	+		GFF4793	0.45	-0.7
163,925	+		GFF4793	0.56	-0.1
163,925	+		GFF4793	0.56	-0.3
163,925	+		GFF4793	0.56	-1.0
163,925	+		GFF4793	0.56	-0.8
163,925	+		GFF4793	0.56	+0.3
163,926	-		GFF4793	0.56	+1.0