Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4788 and GFF4789 are separated by 13 nucleotides GFF4789 and GFF4790 are separated by 87 nucleotides GFF4790 and GFF4791 are separated by 5 nucleotides
GFF4788 - Uncharacterized protein COG3236, at 159,386 to 159,949
GFF4788
GFF4789 - FIG01126746: hypothetical protein, at 159,963 to 160,580
GFF4789
GFF4790 - Nudix-related transcriptional regulator NrtR, at 160,668 to 161,393
GFF4790
GFF4791 - RNA polymerase ECF-type sigma factor, at 161,399 to 162,634
GFF4791
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.783 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 159.882 kb on + strand, within GFF4788 at 160.231 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.348 kb on + strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.349 kb on - strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.435 kb on + strand, within GFF4789 at 160.466 kb on - strand, within GFF4789 at 160.611 kb on + strand at 160.612 kb on - strand at 160.617 kb on + strand at 160.618 kb on - strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.630 kb on + strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.631 kb on - strand at 160.633 kb on - strand at 160.636 kb on - strand at 160.918 kb on - strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.989 kb on + strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 160.990 kb on - strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.148 kb on + strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.149 kb on - strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.211 kb on + strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.212 kb on - strand, within GFF4790 at 161.391 kb on + strand at 161.391 kb on + strand at 161.391 kb on + strand at 161.392 kb on - strand at 161.392 kb on - strand at 161.427 kb on + strand at 161.427 kb on + strand at 161.428 kb on - strand at 161.473 kb on - strand at 161.544 kb on + strand, within GFF4791 at 161.676 kb on + strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.677 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.761 kb on - strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.865 kb on + strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 161.866 kb on - strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.060 kb on + strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791 at 162.061 kb on - strand, within GFF4791
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 159,783 + GFF4788 0.70 -1.3 159,882 + GFF4788 0.88 -0.5 159,882 + GFF4788 0.88 -0.9 160,231 + GFF4789 0.43 -0.9 160,348 + GFF4789 0.62 -0.5 160,348 + GFF4789 0.62 -1.5 160,349 - GFF4789 0.62 -1.8 160,349 - GFF4789 0.62 -0.7 160,435 + GFF4789 0.76 -0.5 160,435 + GFF4789 0.76 +0.7 160,466 - GFF4789 0.81 -0.8 160,611 + +2.0 160,612 - +2.3 160,617 + +0.3 160,618 - +1.0 160,630 + +0.0 160,630 + +0.1 160,630 + +0.3 160,630 + +0.0 160,630 + -0.2 160,631 - -0.0 160,631 - -0.2 160,631 - +1.3 160,631 - +1.6 160,631 - -1.0 160,633 - -1.0 160,636 - -0.1 160,918 - GFF4790 0.34 -3.0 160,989 + GFF4790 0.44 -2.6 160,989 + GFF4790 0.44 -1.7 160,989 + GFF4790 0.44 -1.0 160,989 + GFF4790 0.44 -0.8 160,990 - GFF4790 0.44 -1.9 160,990 - GFF4790 0.44 -1.0 160,990 - GFF4790 0.44 -2.7 161,148 + GFF4790 0.66 -0.8 161,148 + GFF4790 0.66 -1.4 161,148 + GFF4790 0.66 +1.0 161,148 + GFF4790 0.66 +0.8 161,149 - GFF4790 0.66 -2.0 161,149 - GFF4790 0.66 -0.7 161,211 + GFF4790 0.75 -2.2 161,211 + GFF4790 0.75 -1.5 161,211 + GFF4790 0.75 -2.2 161,211 + GFF4790 0.75 +0.3 161,211 + GFF4790 0.75 +0.3 161,212 - GFF4790 0.75 -2.3 161,212 - GFF4790 0.75 -0.3 161,212 - GFF4790 0.75 +0.1 161,212 - GFF4790 0.75 -1.5 161,391 + -0.7 161,391 + -1.5 161,391 + -0.3 161,392 - -0.7 161,392 - -0.4 161,427 + +1.3 161,427 + -0.1 161,428 - -0.6 161,473 - -0.4 161,544 + GFF4791 0.12 -0.2 161,676 + GFF4791 0.22 +1.3 161,677 - GFF4791 0.22 +1.3 161,677 - GFF4791 0.22 -0.3 161,677 - GFF4791 0.22 +0.3 161,761 - GFF4791 0.29 +0.3 161,761 - GFF4791 0.29 -0.5 161,865 + GFF4791 0.38 -0.3 161,865 + GFF4791 0.38 -0.3 161,866 - GFF4791 0.38 -0.7 161,866 - GFF4791 0.38 +0.8 162,060 + GFF4791 0.53 -0.5 162,060 + GFF4791 0.53 -0.7 162,060 + GFF4791 0.53 +1.3 162,060 + GFF4791 0.53 +0.1 162,060 + GFF4791 0.53 -0.1 162,060 + GFF4791 0.53 -2.1 162,060 + GFF4791 0.53 +0.6 162,061 - GFF4791 0.54 +0.3 162,061 - GFF4791 0.54 +1.0 162,061 - GFF4791 0.54 -1.0
Or see this region's nucleotide sequence