Strain Fitness in Variovorax sp. SCN45 around GFF4555

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
191,074	-				+0.7
191,074	-				+1.1
191,074	-				+0.3
191,074	-				+0.3
191,086	+				-1.2
191,086	+				-0.4
191,378	+		GFF4554	0.32	-0.7
191,378	+		GFF4554	0.32	-0.5
191,378	+		GFF4554	0.32	-0.4
191,378	+		GFF4554	0.32	-0.6
191,378	+		GFF4554	0.32	+0.0
191,378	+		GFF4554	0.32	+1.3
191,378	+		GFF4554	0.32	-0.8
191,378	+		GFF4554	0.32	-0.0
191,378	+		GFF4554	0.32	-1.1
191,378	+		GFF4554	0.32	-2.0
191,378	+		GFF4554	0.32	+1.7
191,378	+		GFF4554	0.32	-0.6
191,378	+		GFF4554	0.32	+0.3
191,379	-		GFF4554	0.32	-0.3
191,379	-		GFF4554	0.32	+0.1
191,379	-		GFF4554	0.32	+1.3
191,379	-		GFF4554	0.32	+1.3
191,379	-		GFF4554	0.32	-0.1
191,379	-		GFF4554	0.32	+1.3
191,379	-		GFF4554	0.32	-0.8
191,379	-		GFF4554	0.32	-0.3
191,379	-		GFF4554	0.32	-0.1
191,379	-		GFF4554	0.32	-0.4
191,381	+		GFF4554	0.33	+0.2
191,382	-		GFF4554	0.33	-0.3
191,382	-		GFF4554	0.33	-0.2
191,441	+		GFF4554	0.39	-0.6
191,442	-		GFF4554	0.40	+1.2
191,442	-		GFF4554	0.40	-0.5
191,961	+				-0.4
191,961	+				-0.4
191,961	+				-0.7
191,962	-				+0.1
191,962	-				-0.1
191,962	-				-1.1
191,962	-				-2.0
191,962	-				+0.7
192,005	+				+0.3
192,005	+				-0.9
192,005	+				+2.9
192,006	-				-1.0
192,006	-				-1.0
192,006	-				+1.3
192,060	+				-0.4
192,060	+				-0.3
192,060	+				-0.9
192,060	+				-1.0
192,060	+				+0.1
192,060	+				+0.6
192,061	-				+0.9
192,061	-				-1.2
192,061	-				-0.3
192,061	-				-0.3
192,061	-				-0.6
192,061	-				+0.1
192,061	-				-0.1
192,061	-				-0.9
192,066	+				-1.3
192,066	+				-0.6
192,066	+				-1.0
192,066	+				+0.2
192,067	-				+1.5
192,067	-				-0.6
192,067	-				+1.7
192,067	-				-1.1
192,067	-				-0.7
192,067	-				+1.2
192,075	+				-0.5
192,086	+				-0.4
192,086	+				-1.8
192,087	-				-0.3
192,087	-				-1.7
192,129	+				-0.4
192,129	+				-1.7
192,129	+				-0.8
192,130	-				-1.1
192,130	-				+0.4
192,130	-				-1.5
192,651	+		GFF4555	0.76	-2.2
192,652	-		GFF4555	0.76	-1.0
192,652	-		GFF4555	0.76	-0.7
192,652	-		GFF4555	0.76	+0.0
192,695	+		GFF4555	0.82	+0.0
192,695	+		GFF4555	0.82	+0.1
192,696	-		GFF4555	0.82	+0.0
192,696	-		GFF4555	0.82	+0.4
192,696	-		GFF4555	0.82	-0.7
192,696	-		GFF4555	0.82	+0.1
193,232	+		GFF4556	0.51	+0.5
193,232	+		GFF4556	0.51	-2.0
193,232	+		GFF4556	0.51	-0.0
193,232	+		GFF4556	0.51	-0.1
193,232	+		GFF4556	0.51	-2.6
193,232	+		GFF4556	0.51	-0.1
193,232	+		GFF4556	0.51	+0.1
193,233	-		GFF4556	0.51	-0.5
193,233	-		GFF4556	0.51	+0.1
193,233	-		GFF4556	0.51	-1.1
193,233	-		GFF4556	0.51	-0.7
193,233	-		GFF4556	0.51	-0.6
193,233	-		GFF4556	0.51	-0.7
193,233	-		GFF4556	0.51	-1.0
193,233	-		GFF4556	0.51	-0.2
193,233	-		GFF4556	0.51	+0.0
193,505	+		GFF4556	0.85	+0.1
193,505	+		GFF4556	0.85	+0.7
193,505	+		GFF4556	0.85	-0.8
193,506	-		GFF4556	0.85	+1.7
193,506	-		GFF4556	0.85	-2.7
193,506	-		GFF4556	0.85	-0.0
193,506	-		GFF4556	0.85	-0.2
193,506	-		GFF4556	0.85	-0.9
193,506	-		GFF4556	0.85	-1.6
193,532	+		GFF4556	0.88	+0.7
193,533	-		GFF4556	0.88	+0.3
193,756	+		GFF4557	0.13	-2.1
193,756	+		GFF4557	0.13	+1.7
193,756	+		GFF4557	0.13	-0.7
193,756	+		GFF4557	0.13	+1.7
193,757	-		GFF4557	0.13	-0.3
193,757	-		GFF4557	0.13	-0.8