Strain Fitness in Variovorax sp. SCN45 around GFF4530

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4529 and GFF4530 are separated by 170 nucleotidesGFF4530 and GFF4531 overlap by 4 nucleotidesGFF4531 and GFF4532 are separated by 140 nucleotides GFF4529 - Probable signal peptide protein, at 167,148 to 167,978 GFF4529 GFF4530 - MBL-fold metallo-hydrolase superfamily, at 168,149 to 169,825 GFF4530 GFF4531 - Pseudouridine synthase, at 169,822 to 170,547 GFF4531 GFF4532 - hypothetical protein, at 170,688 to 171,233 GFF4532 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 167.259 kb on + strand, within GFF4529at 167.259 kb on + strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.260 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.336 kb on - strand, within GFF4529at 167.353 kb on - strand, within GFF4529at 167.376 kb on + strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.377 kb on - strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.439 kb on + strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.440 kb on - strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.496 kb on + strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.497 kb on - strand, within GFF4529at 167.502 kb on + strand, within GFF4529at 167.502 kb on + strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.503 kb on - strand, within GFF4529at 167.526 kb on - strand, within GFF4529at 167.526 kb on - strand, within GFF4529at 167.538 kb on + strand, within GFF4529at 167.553 kb on + strand, within GFF4529at 167.589 kb on + strand, within GFF4529at 167.613 kb on + strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.614 kb on - strand, within GFF4529at 167.685 kb on + strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.686 kb on - strand, within GFF4529at 167.734 kb on - strand, within GFF4529at 167.734 kb on - strand, within GFF4529at 167.769 kb on + strand, within GFF4529at 167.770 kb on - strand, within GFF4529at 167.788 kb on - strand, within GFF4529at 167.805 kb on + strand, within GFF4529at 167.805 kb on + strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.806 kb on - strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.868 kb on + strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.869 kb on - strand, within GFF4529at 167.928 kb on + strandat 167.928 kb on + strandat 167.928 kb on + strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.929 kb on - strandat 167.951 kb on + strandat 167.976 kb on + strandat 167.976 kb on + strandat 167.977 kb on - strandat 167.977 kb on - strandat 167.977 kb on - strandat 168.038 kb on + strandat 168.038 kb on + strandat 168.039 kb on - strandat 168.299 kb on + strandat 168.299 kb on + strandat 168.299 kb on + strandat 168.300 kb on - strandat 168.300 kb on - strandat 168.300 kb on - strandat 168.300 kb on - strandat 168.300 kb on - strandat 168.483 kb on + strand, within GFF4530at 168.483 kb on + strand, within GFF4530at 168.483 kb on + strand, within GFF4530at 168.483 kb on + strand, within GFF4530at 168.483 kb on + strand, within GFF4530at 168.484 kb on - strand, within GFF4530at 168.792 kb on - strand, within GFF4530at 168.902 kb on + strand, within GFF4530at 168.902 kb on + strand, within GFF4530at 168.903 kb on - strand, within GFF4530at 168.903 kb on - strand, within GFF4530at 168.903 kb on - strand, within GFF4530at 168.903 kb on - strand, within GFF4530at 168.903 kb on - strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.904 kb on + strand, within GFF4530at 168.905 kb on - strand, within GFF4530at 168.905 kb on - strand, within GFF4530at 168.905 kb on - strand, within GFF4530at 168.905 kb on - strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.070 kb on + strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.071 kb on - strand, within GFF4530at 169.098 kb on - strand, within GFF4530at 169.529 kb on + strand, within GFF4530at 169.530 kb on - strand, within GFF4530at 169.530 kb on - strand, within GFF4530at 169.530 kb on - strand, within GFF4530at 169.530 kb on - strand, within GFF4530at 169.604 kb on + strand, within GFF4530at 169.604 kb on + strand, within GFF4530at 169.733 kb on + strandat 169.827 kb on + strandat 169.827 kb on + strandat 169.828 kb on - strandat 169.828 kb on - strandat 169.828 kb on - strandat 169.925 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.056 kb on + strand, within GFF4531at 170.057 kb on - strand, within GFF4531at 170.216 kb on - strand, within GFF4531at 170.216 kb on - strand, within GFF4531at 170.521 kb on + strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.758 kb on - strand, within GFF4532at 170.758 kb on - strand, within GFF4532

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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167,259 + GFF4529 0.13 +0.0
167,259 + GFF4529 0.13 +0.2
167,260 - GFF4529 0.13 -0.5
167,260 - GFF4529 0.13 -0.3
167,260 - GFF4529 0.13 -0.7
167,260 - GFF4529 0.13 -0.1
167,336 - GFF4529 0.23 -0.4
167,336 - GFF4529 0.23 +0.4
167,336 - GFF4529 0.23 -0.5
167,336 - GFF4529 0.23 -0.5
167,336 - GFF4529 0.23 -0.2
167,353 - GFF4529 0.25 +0.1
167,376 + GFF4529 0.27 +0.7
167,377 - GFF4529 0.28 +0.7
167,377 - GFF4529 0.28 -0.2
167,377 - GFF4529 0.28 +0.3
167,377 - GFF4529 0.28 +0.2
167,377 - GFF4529 0.28 +0.4
167,377 - GFF4529 0.28 -0.5
167,377 - GFF4529 0.28 -0.7
167,377 - GFF4529 0.28 +0.6
167,439 + GFF4529 0.35 -0.1
167,439 + GFF4529 0.35 -0.1
167,439 + GFF4529 0.35 +0.0
167,439 + GFF4529 0.35 -0.7
167,439 + GFF4529 0.35 -0.6
167,440 - GFF4529 0.35 -0.3
167,440 - GFF4529 0.35 -0.8
167,440 - GFF4529 0.35 +0.2
167,496 + GFF4529 0.42 +0.2
167,496 + GFF4529 0.42 -0.5
167,496 + GFF4529 0.42 +1.4
167,496 + GFF4529 0.42 -0.2
167,496 + GFF4529 0.42 +0.2
167,496 + GFF4529 0.42 +0.1
167,496 + GFF4529 0.42 +1.0
167,496 + GFF4529 0.42 +0.7
167,496 + GFF4529 0.42 -0.5
167,496 + GFF4529 0.42 -0.2
167,496 + GFF4529 0.42 -0.5
167,496 + GFF4529 0.42 +1.1
167,496 + GFF4529 0.42 +0.6
167,496 + GFF4529 0.42 -0.0
167,496 + GFF4529 0.42 -1.1
167,497 - GFF4529 0.42 -0.0
167,497 - GFF4529 0.42 +0.3
167,497 - GFF4529 0.42 +0.1
167,497 - GFF4529 0.42 +0.4
167,497 - GFF4529 0.42 -0.3
167,497 - GFF4529 0.42 +0.7
167,497 - GFF4529 0.42 -0.8
167,497 - GFF4529 0.42 -0.3
167,497 - GFF4529 0.42 -0.6
167,497 - GFF4529 0.42 +0.9
167,497 - GFF4529 0.42 +0.1
167,497 - GFF4529 0.42 -0.8
167,497 - GFF4529 0.42 +0.1
167,497 - GFF4529 0.42 +0.5
167,502 + GFF4529 0.43 +1.2
167,502 + GFF4529 0.43 -0.7
167,503 - GFF4529 0.43 -0.2
167,503 - GFF4529 0.43 +0.1
167,503 - GFF4529 0.43 -0.4
167,526 - GFF4529 0.45 -0.9
167,526 - GFF4529 0.45 +0.2
167,538 + GFF4529 0.47 +0.1
167,553 + GFF4529 0.49 -0.4
167,589 + GFF4529 0.53 -0.3
167,613 + GFF4529 0.56 +1.1
167,614 - GFF4529 0.56 -1.8
167,614 - GFF4529 0.56 -0.4
167,614 - GFF4529 0.56 +0.5
167,685 + GFF4529 0.65 -0.2
167,686 - GFF4529 0.65 -0.1
167,686 - GFF4529 0.65 +0.2
167,686 - GFF4529 0.65 +0.4
167,686 - GFF4529 0.65 +0.0
167,734 - GFF4529 0.71 -0.5
167,734 - GFF4529 0.71 -0.3
167,769 + GFF4529 0.75 +0.2
167,770 - GFF4529 0.75 -0.4
167,788 - GFF4529 0.77 -0.2
167,805 + GFF4529 0.79 -0.4
167,805 + GFF4529 0.79 -0.0
167,806 - GFF4529 0.79 -0.9
167,806 - GFF4529 0.79 -0.7
167,806 - GFF4529 0.79 -1.0
167,868 + GFF4529 0.87 -0.3
167,868 + GFF4529 0.87 +0.3
167,868 + GFF4529 0.87 +0.5
167,869 - GFF4529 0.87 -0.8
167,869 - GFF4529 0.87 -0.6
167,869 - GFF4529 0.87 -1.2
167,928 + +0.9
167,928 + -0.5
167,928 + +0.5
167,929 - +0.0
167,929 - -0.4
167,929 - +0.6
167,929 - +0.4
167,929 - -0.2
167,951 + -0.5
167,976 + -0.4
167,976 + -1.3
167,977 - +0.1
167,977 - -0.4
167,977 - -0.4
168,038 + +0.5
168,038 + +0.1
168,039 - +0.1
168,299 + -1.5
168,299 + -0.7
168,299 + -0.9
168,300 - -0.7
168,300 - -0.3
168,300 - -1.9
168,300 - -0.2
168,300 - +0.2
168,483 + GFF4530 0.20 -1.6
168,483 + GFF4530 0.20 +0.4
168,483 + GFF4530 0.20 -2.9
168,483 + GFF4530 0.20 -1.0
168,483 + GFF4530 0.20 +0.1
168,484 - GFF4530 0.20 -2.1
168,792 - GFF4530 0.38 -1.1
168,902 + GFF4530 0.45 -1.5
168,902 + GFF4530 0.45 -0.4
168,903 - GFF4530 0.45 -1.6
168,903 - GFF4530 0.45 -1.1
168,903 - GFF4530 0.45 -2.1
168,903 - GFF4530 0.45 -3.2
168,903 - GFF4530 0.45 -2.7
168,904 + GFF4530 0.45 -1.5
168,904 + GFF4530 0.45 -1.7
168,904 + GFF4530 0.45 +0.5
168,904 + GFF4530 0.45 +0.2
168,904 + GFF4530 0.45 -2.5
168,904 + GFF4530 0.45 -0.7
168,904 + GFF4530 0.45 -1.3
168,904 + GFF4530 0.45 +0.4
168,904 + GFF4530 0.45 -2.4
168,904 + GFF4530 0.45 -1.9
168,905 - GFF4530 0.45 +1.1
168,905 - GFF4530 0.45 -0.7
168,905 - GFF4530 0.45 -0.7
168,905 - GFF4530 0.45 -1.5
169,070 + GFF4530 0.55 -0.5
169,070 + GFF4530 0.55 -0.9
169,070 + GFF4530 0.55 +1.7
169,070 + GFF4530 0.55 -0.1
169,070 + GFF4530 0.55 -2.7
169,070 + GFF4530 0.55 -2.0
169,071 - GFF4530 0.55 +0.5
169,071 - GFF4530 0.55 -1.4
169,071 - GFF4530 0.55 -1.0
169,071 - GFF4530 0.55 +0.7
169,071 - GFF4530 0.55 -2.0
169,071 - GFF4530 0.55 -0.7
169,071 - GFF4530 0.55 -1.8
169,071 - GFF4530 0.55 -1.5
169,071 - GFF4530 0.55 -1.5
169,098 - GFF4530 0.57 -1.5
169,529 + GFF4530 0.82 -2.1
169,530 - GFF4530 0.82 -1.3
169,530 - GFF4530 0.82 -1.2
169,530 - GFF4530 0.82 +1.1
169,530 - GFF4530 0.82 -2.2
169,604 + GFF4530 0.87 -1.4
169,604 + GFF4530 0.87 -1.1
169,733 + -2.7
169,827 + -0.1
169,827 + -0.0
169,828 - +0.4
169,828 - -0.7
169,828 - -0.3
169,925 + GFF4531 0.14 +0.2
170,056 + GFF4531 0.32 +0.4
170,056 + GFF4531 0.32 -0.4
170,056 + GFF4531 0.32 -0.7
170,056 + GFF4531 0.32 -0.1
170,056 + GFF4531 0.32 -0.6
170,056 + GFF4531 0.32 -0.8
170,057 - GFF4531 0.32 -1.7
170,216 - GFF4531 0.54 -0.7
170,216 - GFF4531 0.54 +0.2
170,521 + -0.7
170,522 - -0.5
170,522 - -0.1
170,522 - +0.6
170,522 - +1.7
170,757 + GFF4532 0.13 +0.3
170,757 + GFF4532 0.13 +0.1
170,757 + GFF4532 0.13 +0.5
170,757 + GFF4532 0.13 +0.2
170,757 + GFF4532 0.13 +0.7
170,757 + GFF4532 0.13 -1.0
170,758 - GFF4532 0.13 +0.0
170,758 - GFF4532 0.13 -0.1

Or see this region's nucleotide sequence