Strain Fitness in Variovorax sp. SCN45 around GFF4447

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
85,346	+		GFF4445	0.72	-0.3
85,346	+		GFF4445	0.72	+0.4
85,346	+		GFF4445	0.72	-1.1
85,347	-		GFF4445	0.72	+0.4
85,347	-		GFF4445	0.72	-0.4
85,347	-		GFF4445	0.72	-0.2
85,758	-				-0.2
85,758	-				+0.2
85,758	-				+0.1
85,804	+		GFF4446	0.11	+0.2
85,804	+		GFF4446	0.11	+1.0
85,804	+		GFF4446	0.11	-0.8
85,804	+		GFF4446	0.11	+0.7
85,804	+		GFF4446	0.11	-0.2
85,804	+		GFF4446	0.11	+0.7
85,804	+		GFF4446	0.11	+0.7
85,804	+		GFF4446	0.11	-1.8
85,804	+		GFF4446	0.11	-0.6
85,805	-		GFF4446	0.11	+0.3
85,805	-		GFF4446	0.11	+1.2
85,805	-		GFF4446	0.11	-0.3
85,805	-		GFF4446	0.11	-0.3
85,805	-		GFF4446	0.11	-0.5
85,805	-		GFF4446	0.11	-0.6
85,830	+		GFF4446	0.16	+0.2
85,830	+		GFF4446	0.16	-0.0
85,830	+		GFF4446	0.16	-0.1
85,830	+		GFF4446	0.16	-0.3
85,830	+		GFF4446	0.16	-0.3
85,831	-		GFF4446	0.16	+0.6
85,831	-		GFF4446	0.16	+0.5
85,831	-		GFF4446	0.16	+0.7
85,831	-		GFF4446	0.16	+0.7
85,831	-		GFF4446	0.16	+0.7
85,831	-		GFF4446	0.16	-0.3
85,831	-		GFF4446	0.16	-0.3
85,831	-		GFF4446	0.16	-0.9
85,908	+		GFF4446	0.30	+0.7
85,908	+		GFF4446	0.30	+0.2
85,908	+		GFF4446	0.30	-0.2
85,908	+		GFF4446	0.30	+0.3
85,908	+		GFF4446	0.30	-0.3
85,908	+		GFF4446	0.30	-0.2
85,908	+		GFF4446	0.30	-0.8
85,908	+		GFF4446	0.30	+0.3
85,908	+		GFF4446	0.30	+2.1
85,908	+		GFF4446	0.30	-0.1
85,908	+		GFF4446	0.30	+0.2
85,908	+		GFF4446	0.30	+1.7
85,909	-		GFF4446	0.31	-0.2
85,909	-		GFF4446	0.31	+0.1
85,909	-		GFF4446	0.31	+1.6
85,909	-		GFF4446	0.31	+0.7
85,909	-		GFF4446	0.31	-0.7
85,909	-		GFF4446	0.31	-1.3
85,909	-		GFF4446	0.31	-0.9
85,909	-		GFF4446	0.31	-0.6
85,909	-		GFF4446	0.31	-0.5
85,909	-		GFF4446	0.31	+0.3
85,909	-		GFF4446	0.31	-0.2
85,909	-		GFF4446	0.31	-0.8
85,909	-		GFF4446	0.31	-2.2
85,909	-		GFF4446	0.31	+0.1
85,909	-		GFF4446	0.31	-0.1
85,909	-		GFF4446	0.31	-2.1
85,909	-		GFF4446	0.31	-0.4
86,145	+		GFF4446	0.76	+0.2
86,145	+		GFF4446	0.76	-0.5
86,145	+		GFF4446	0.76	-0.3
86,145	+		GFF4446	0.76	+2.7
86,145	+		GFF4446	0.76	+0.5
86,145	+		GFF4446	0.76	-0.0
86,145	+		GFF4446	0.76	-0.8
86,146	-		GFF4446	0.76	-0.8
86,146	-		GFF4446	0.76	+0.4
86,146	-		GFF4446	0.76	-1.2
86,146	-		GFF4446	0.76	+2.0
86,371	+				+0.2
86,371	+				-0.8
86,372	-				-2.0
86,372	-				-0.7
86,621	-		GFF4447	0.31	+0.3
86,621	-		GFF4447	0.31	-1.3
86,621	-		GFF4447	0.31	-1.5
86,621	-		GFF4447	0.31	-1.4
86,706	+		GFF4447	0.38	+0.7
86,706	+		GFF4447	0.38	-1.1
86,706	+		GFF4447	0.38	-1.3
86,707	-		GFF4447	0.38	+0.4
86,707	-		GFF4447	0.38	-3.8
86,887	+		GFF4447	0.55	-0.3
86,887	+		GFF4447	0.55	-0.7
86,887	+		GFF4447	0.55	-1.5
86,887	+		GFF4447	0.55	-0.9
86,887	+		GFF4447	0.55	-2.5
86,887	+		GFF4447	0.55	-1.0
86,887	+		GFF4447	0.55	-0.9
86,887	+		GFF4447	0.55	-1.6
86,888	-		GFF4447	0.55	-1.3
86,888	-		GFF4447	0.55	-2.1
86,888	-		GFF4447	0.55	-2.2
86,888	-		GFF4447	0.55	-1.1
86,888	-		GFF4447	0.55	-0.9
86,888	-		GFF4447	0.55	-1.9
87,007	+		GFF4447	0.65	-3.7
87,007	+		GFF4447	0.65	+0.3
87,008	-		GFF4447	0.65	-0.5
87,008	-		GFF4447	0.65	-1.6
87,008	-		GFF4447	0.65	-1.8
87,008	-		GFF4447	0.65	-0.8
87,057	+		GFF4447	0.70	+1.7
87,061	+		GFF4447	0.70	-1.9
87,094	+		GFF4447	0.73	-2.4
87,094	+		GFF4447	0.73	-1.9
87,094	+		GFF4447	0.73	-1.3
87,095	-		GFF4447	0.73	-1.3
87,095	-		GFF4447	0.73	-1.6
87,127	+		GFF4447	0.76	-0.0
87,127	+		GFF4447	0.76	-0.5
87,128	-		GFF4447	0.76	-2.1
87,128	-		GFF4447	0.76	-0.1
87,358	+				+1.1
87,358	+				-1.7
87,358	+				-0.3
87,359	-				-1.9
87,359	-				-2.6
87,433	-				-0.1
87,492	-				+0.5
87,533	+				+1.2
87,534	-				-0.1
87,534	-				-0.7
87,545	+				-0.1
87,577	+				+0.4
87,578	-				-0.0
87,578	-				-1.0
87,578	-				-0.1
87,616	-				-0.0
87,720	+		GFF4448	0.20	+0.5
87,720	+		GFF4448	0.20	-1.1
87,720	+		GFF4448	0.20	-1.6
87,720	+		GFF4448	0.20	+0.1
87,720	+		GFF4448	0.20	-1.3
87,720	+		GFF4448	0.20	-0.1
87,720	+		GFF4448	0.20	-2.3
87,720	+		GFF4448	0.20	+0.1
87,720	+		GFF4448	0.20	+0.4
87,720	+		GFF4448	0.20	+0.3
87,720	+		GFF4448	0.20	+0.5
87,720	+		GFF4448	0.20	-1.0
87,720	+		GFF4448	0.20	-0.6
87,720	+		GFF4448	0.20	-0.2
87,720	+		GFF4448	0.20	-1.2
87,720	+		GFF4448	0.20	-0.7
87,720	+		GFF4448	0.20	+0.1
87,720	+		GFF4448	0.20	+0.5
87,720	+		GFF4448	0.20	-0.4
87,720	+		GFF4448	0.20	+0.6
87,720	+		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	-0.9
87,721	-		GFF4448	0.20	-1.2
87,721	-		GFF4448	0.20	-0.2
87,721	-		GFF4448	0.20	-1.5
87,721	-		GFF4448	0.20	-1.2
87,721	-		GFF4448	0.20	+0.4
87,721	-		GFF4448	0.20	-1.8
87,721	-		GFF4448	0.20	+0.5
87,721	-		GFF4448	0.20	-0.7
87,721	-		GFF4448	0.20	-0.9
87,721	-		GFF4448	0.20	+0.9
87,721	-		GFF4448	0.20	+0.1
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	-0.4
87,721	-		GFF4448	0.20	+0.2
87,721	-		GFF4448	0.20	+0.7
87,721	-		GFF4448	0.20	-2.0
87,721	-		GFF4448	0.20	+0.1
87,721	-		GFF4448	0.20	+0.7
87,721	-		GFF4448	0.20	-0.9
87,721	-		GFF4448	0.20	+0.7
87,721	-		GFF4448	0.20	-0.3
87,721	-		GFF4448	0.20	-1.3
87,721	-		GFF4448	0.20	-0.3
87,721	-		GFF4448	0.20	-1.1
87,721	-		GFF4448	0.20	+0.1
87,721	-		GFF4448	0.20	-0.4
87,721	-		GFF4448	0.20	-0.7
87,721	-		GFF4448	0.20	-0.3
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	+0.9
87,721	-		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	-0.1
87,730	-		GFF4448	0.22	-0.2
87,756	+		GFF4448	0.27	-1.5
87,756	+		GFF4448	0.27	-0.5
87,756	+		GFF4448	0.27	-1.8
87,757	-		GFF4448	0.27	-1.1
87,757	-		GFF4448	0.27	+0.1
87,757	-		GFF4448	0.27	-1.1
87,757	-		GFF4448	0.27	+0.2
87,786	+		GFF4448	0.32	-0.0
87,786	+		GFF4448	0.32	-1.8
87,786	+		GFF4448	0.32	-0.2
87,786	+		GFF4448	0.32	-0.4
87,786	+		GFF4448	0.32	-0.7
87,786	+		GFF4448	0.32	-0.4
87,787	-		GFF4448	0.33	-1.3
87,787	-		GFF4448	0.33	-0.0
87,787	-		GFF4448	0.33	+0.2
87,787	-		GFF4448	0.33	+0.1
87,787	-		GFF4448	0.33	-0.7
87,787	-		GFF4448	0.33	-0.3
87,787	-		GFF4448	0.33	+0.7
87,787	-		GFF4448	0.33	-0.7
87,787	-		GFF4448	0.33	-0.0
87,787	-		GFF4448	0.33	+2.1
87,787	-		GFF4448	0.33	+1.7
87,787	-		GFF4448	0.33	-0.1
87,903	+		GFF4448	0.54	+0.3
87,903	+		GFF4448	0.54	+1.7
87,904	-		GFF4448	0.55	-0.2
87,904	-		GFF4448	0.55	-0.0
88,189	+				-0.1
88,189	+				-0.3
88,189	+				+0.5
88,189	+				-0.5
88,189	+				+0.6
88,189	+				-1.1
88,189	+				-0.4
88,190	-				-0.1
88,190	-				-0.5
88,190	-				+0.6
88,190	-				-0.0
88,190	-				+0.4
88,190	-				-0.2
88,190	-				-0.2
88,190	-				-0.1
88,190	-				+0.7
88,190	-				+1.7
88,190	-				-0.5
88,228	+				+1.2
88,228	+				+1.0
88,228	+				-0.1
88,228	+				-0.8
88,228	+				+0.8
88,228	+				+0.4
88,228	+				-0.2
88,228	+				+1.4
88,228	+				+0.3
88,229	-				-0.6
88,229	-				+0.2
88,229	-				+0.3
88,242	+				-0.1
88,242	+				+0.3
88,242	+				-1.0
88,242	+				-0.1
88,242	+				-1.0
88,242	+				-0.7
88,242	+				-0.4
88,242	+				-0.5
88,242	+				-0.1
88,242	+				-0.2
88,242	+				+0.1
88,242	+				+0.9
88,242	+				-0.7
88,242	+				-0.1
88,242	+				+1.5
88,242	+				+0.1
88,242	+				+2.5
88,242	+				+2.7
88,243	-				-0.6
88,243	-				-0.1
88,243	-				+0.0
88,243	-				+0.3
88,243	-				+0.1
88,243	-				-1.1
88,243	-				-1.8
88,243	-				-1.7
88,243	-				-1.3
88,243	-				+0.1
88,243	-				-1.9
88,243	-				-0.4
88,243	-				+0.0