Strain Fitness in Variovorax sp. SCN45 around GFF4425

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
60,130	+		GFF4423	0.66	-0.3
60,130	+		GFF4423	0.66	-0.5
60,130	+		GFF4423	0.66	+0.4
60,130	+		GFF4423	0.66	+0.4
60,130	+		GFF4423	0.66	-0.8
60,130	+		GFF4423	0.66	+0.3
60,130	+		GFF4423	0.66	-0.2
60,130	+		GFF4423	0.66	+0.4
60,131	-		GFF4423	0.66	+0.1
60,148	+		GFF4423	0.67	-0.9
60,148	+		GFF4423	0.67	+0.0
60,148	+		GFF4423	0.67	-0.1
60,148	+		GFF4423	0.67	-0.3
60,148	+		GFF4423	0.67	-1.3
60,148	+		GFF4423	0.67	+0.4
60,149	-		GFF4423	0.67	-0.7
60,149	-		GFF4423	0.67	-0.0
60,149	-		GFF4423	0.67	-0.5
60,248	-		GFF4423	0.75	-0.2
60,248	-		GFF4423	0.75	+1.7
60,264	+		GFF4423	0.76	-2.8
60,264	+		GFF4423	0.76	+0.6
60,264	+		GFF4423	0.76	-1.0
60,264	+		GFF4423	0.76	+0.4
60,265	-		GFF4423	0.76	-0.3
60,265	-		GFF4423	0.76	+0.1
60,265	-		GFF4423	0.76	-1.1
60,265	-		GFF4423	0.76	+0.2
60,265	-		GFF4423	0.76	+0.2
60,265	-		GFF4423	0.76	-0.3
60,265	-		GFF4423	0.76	-0.0
60,265	-		GFF4423	0.76	-1.5
60,265	-		GFF4423	0.76	-1.4
60,265	-		GFF4423	0.76	-2.1
60,265	-		GFF4423	0.76	+0.1
60,265	-		GFF4423	0.76	+0.2
60,274	+		GFF4423	0.77	+0.2
60,274	+		GFF4423	0.77	-0.4
60,274	+		GFF4423	0.77	-0.3
60,274	+		GFF4423	0.77	+0.7
60,274	+		GFF4423	0.77	-0.5
60,274	+		GFF4423	0.77	+0.3
60,274	+		GFF4423	0.77	-0.5
60,275	-		GFF4423	0.77	+1.1
60,275	-		GFF4423	0.77	-0.2
60,275	-		GFF4423	0.77	-1.9
60,275	-		GFF4423	0.77	-0.1
60,275	-		GFF4423	0.77	+0.4
60,275	-		GFF4423	0.77	+0.7
60,526	+				+0.0
60,526	+				-0.1
60,527	-				+0.5
60,527	-				-0.2
60,527	-				+0.1
60,527	-				-0.5
60,527	-				+0.3
60,527	-				-0.4
60,541	+				+0.1
60,541	+				-1.1
60,541	+				+0.7
60,541	+				-1.4
60,541	+				-1.7
60,542	-				-0.3
60,542	-				+0.6
60,542	-				-1.0
60,542	-				+0.0
60,542	-				+0.3
60,542	-				-0.4
60,577	+				+0.3
60,577	+				+0.3
60,577	+				-0.3
60,577	+				+0.7
60,578	-				-0.5
60,660	+		GFF4424	0.40	-2.1
60,660	+		GFF4424	0.40	+1.1
60,684	+		GFF4424	0.50	+0.3
60,684	+		GFF4424	0.50	-2.5
60,684	+		GFF4424	0.50	+0.1
60,684	+		GFF4424	0.50	+0.4
60,684	+		GFF4424	0.50	-1.0
60,684	+		GFF4424	0.50	+0.7
60,684	+		GFF4424	0.50	-0.1
60,684	+		GFF4424	0.50	+0.0
60,684	+		GFF4424	0.50	-1.1
60,685	-		GFF4424	0.50	+0.4
60,685	-		GFF4424	0.50	+0.7
60,685	-		GFF4424	0.50	+0.9
60,685	-		GFF4424	0.50	+0.1
60,685	-		GFF4424	0.50	+0.7
60,685	-		GFF4424	0.50	-0.2
60,727	+		GFF4424	0.67	+0.1
60,727	+		GFF4424	0.67	-0.6
60,727	+		GFF4424	0.67	+0.1
60,727	+		GFF4424	0.67	+0.0
60,727	+		GFF4424	0.67	-0.3
60,727	+		GFF4424	0.67	+0.4
60,727	+		GFF4424	0.67	-0.8
60,727	+		GFF4424	0.67	-0.6
60,727	+		GFF4424	0.67	-0.5
60,727	+		GFF4424	0.67	+0.1
60,727	+		GFF4424	0.67	+0.0
60,727	+		GFF4424	0.67	-1.5
60,727	+		GFF4424	0.67	+0.5
60,727	+		GFF4424	0.67	+0.8
60,728	-		GFF4424	0.68	+0.4
60,728	-		GFF4424	0.68	+1.7
60,728	-		GFF4424	0.68	-0.5
60,728	-		GFF4424	0.68	-0.6
60,728	-		GFF4424	0.68	-0.2
60,728	-		GFF4424	0.68	+0.1
60,728	-		GFF4424	0.68	+0.3
60,728	-		GFF4424	0.68	-0.5
60,728	-		GFF4424	0.68	-1.2
60,728	-		GFF4424	0.68	-0.3
60,728	-		GFF4424	0.68	-0.2
60,728	-		GFF4424	0.68	+0.0
60,728	-		GFF4424	0.68	-0.7
60,728	-		GFF4424	0.68	+1.2
60,728	-		GFF4424	0.68	+0.7
60,728	-		GFF4424	0.68	+0.3
60,728	-		GFF4424	0.68	-0.3
60,728	-		GFF4424	0.68	+0.0
60,728	-		GFF4424	0.68	-1.2
60,728	-		GFF4424	0.68	-0.3
60,728	-		GFF4424	0.68	+0.2
60,728	-		GFF4424	0.68	+0.5
60,728	-		GFF4424	0.68	+0.7
60,947	+				+0.0
60,948	-				+0.4
60,948	-				+0.0
60,948	-				-0.1
60,958	+				+0.3
60,959	-				-1.3
60,959	-				-0.0
60,959	-				+0.5
60,959	-				+0.3
60,959	-				-0.3
60,959	-				+0.6
60,959	-				-0.4
60,997	+				-2.2
61,002	+				-0.3
61,002	+				+0.9
61,002	+				+0.2
61,002	+				-0.5
61,002	+				-0.5
61,002	+				-1.0
61,003	-				-1.0
61,003	-				-0.0
61,003	-				+0.9
61,003	-				+0.1
61,003	-				-0.8
61,003	-				-0.2
61,007	+				-0.8
61,007	+				-0.0
61,007	+				-0.3
61,007	+				-0.7
61,007	+				+0.2
61,007	+				+1.2
61,007	+				-0.3
61,007	+				-0.7
61,007	+				-1.5
61,007	+				+0.2
61,007	+				-0.7
61,007	+				-2.1
61,007	+				+0.9
61,007	+				-0.1
61,007	+				+0.0
61,007	+				-0.6
61,008	-				+0.0
61,008	-				+0.9
61,008	-				+0.1
61,008	-				-0.6
61,008	-				+0.1
61,008	-				+0.1
61,008	-				-0.3
61,008	-				-1.1
61,008	-				+0.2
61,008	-				-0.1
61,008	-				+0.1
61,008	-				-0.3
61,008	-				-0.0
61,008	-				-1.8
61,008	-				+1.7
61,008	-				-0.4
61,008	-				+0.1
61,008	-				+0.4
61,017	+				-1.6
61,017	+				-1.7
61,017	+				+2.8
61,017	+				+0.3
61,017	+				-0.0
61,017	+				-0.7
61,017	+				+0.4
61,018	-				+0.1
61,018	-				+1.1
61,018	-				-0.3
61,018	-				+1.9
61,018	-				+0.9
61,124	-				-0.3
61,219	-				+0.3
61,219	-				+0.9
61,219	-				-1.3
61,219	-				+0.2
61,245	+				-0.5
61,245	+				-0.2
61,245	+				+0.6
61,245	+				-0.5
61,245	+				-0.1
61,245	+				-0.0
61,245	+				-2.0
61,245	+				+0.5
61,246	-				-0.6
61,246	-				+0.1
61,246	-				+0.3
61,246	-				-0.1
61,246	-				-0.8
61,246	-				+0.2
61,246	-				-1.7
61,246	-				+0.2
61,246	-				+0.0
61,443	+		GFF4425	0.15	-1.1
61,539	+		GFF4425	0.19	-0.4
61,539	+		GFF4425	0.19	-0.2
61,540	-		GFF4425	0.19	+1.1
61,540	-		GFF4425	0.19	+0.2
61,549	+		GFF4425	0.19	-1.5
61,550	-		GFF4425	0.19	-0.4
61,803	+		GFF4425	0.30	-0.4
61,803	+		GFF4425	0.30	-0.5
61,803	+		GFF4425	0.30	-0.1
61,803	+		GFF4425	0.30	-1.3
61,803	+		GFF4425	0.30	-0.8
61,803	+		GFF4425	0.30	+1.2
61,803	+		GFF4425	0.30	-0.1
61,803	+		GFF4425	0.30	-0.6
61,803	+		GFF4425	0.30	+0.8
61,803	+		GFF4425	0.30	-1.7
61,803	+		GFF4425	0.30	+1.1
61,803	+		GFF4425	0.30	+1.2
61,803	+		GFF4425	0.30	+1.4
61,803	+		GFF4425	0.30	-0.7
61,803	+		GFF4425	0.30	-0.5
61,803	+		GFF4425	0.30	+0.0
61,803	+		GFF4425	0.30	+0.8
61,804	-		GFF4425	0.30	+0.7
61,804	-		GFF4425	0.30	-0.2
61,804	-		GFF4425	0.30	-0.1
61,804	-		GFF4425	0.30	+0.5
61,804	-		GFF4425	0.30	-0.2
61,804	-		GFF4425	0.30	+0.1
61,804	-		GFF4425	0.30	-0.5
61,804	-		GFF4425	0.30	-0.8
61,804	-		GFF4425	0.30	-0.4
61,804	-		GFF4425	0.30	+0.4
61,804	-		GFF4425	0.30	+0.0
61,804	-		GFF4425	0.30	-0.0
61,804	-		GFF4425	0.30	-0.5
61,804	-		GFF4425	0.30	+2.5
61,818	+		GFF4425	0.30	-0.7
61,818	+		GFF4425	0.30	-0.2
61,818	+		GFF4425	0.30	+0.3
61,818	+		GFF4425	0.30	-1.0
61,818	+		GFF4425	0.30	+0.4
61,819	-		GFF4425	0.31	-0.1
61,819	-		GFF4425	0.31	-0.5
61,819	-		GFF4425	0.31	-1.7
61,819	-		GFF4425	0.31	-0.2
61,819	-		GFF4425	0.31	+0.1
61,869	+		GFF4425	0.33	+1.9
61,870	-		GFF4425	0.33	-0.3
61,870	-		GFF4425	0.33	-0.9
62,062	-		GFF4425	0.40	+0.4
62,121	+		GFF4425	0.43	-1.0
62,121	+		GFF4425	0.43	+1.3
62,121	+		GFF4425	0.43	-0.1
62,121	+		GFF4425	0.43	-0.4
62,121	+		GFF4425	0.43	+0.2
62,122	-		GFF4425	0.43	-0.1
62,122	-		GFF4425	0.43	-0.7
62,122	-		GFF4425	0.43	+1.2
62,122	-		GFF4425	0.43	+0.5
62,122	-		GFF4425	0.43	-0.2
62,124	+		GFF4425	0.43	+0.9
62,124	+		GFF4425	0.43	-0.7
62,124	+		GFF4425	0.43	-0.1
62,124	+		GFF4425	0.43	+1.2
62,124	+		GFF4425	0.43	+0.9
62,124	+		GFF4425	0.43	-0.1
62,124	+		GFF4425	0.43	-0.7
62,124	+		GFF4425	0.43	+0.8
62,124	+		GFF4425	0.43	-0.5
62,124	+		GFF4425	0.43	-0.3
62,124	+		GFF4425	0.43	-0.3
62,125	-		GFF4425	0.43	+0.1
62,125	-		GFF4425	0.43	+0.4
62,125	-		GFF4425	0.43	-0.5
62,125	-		GFF4425	0.43	+0.5
62,125	-		GFF4425	0.43	-0.1
62,229	+		GFF4425	0.47	+0.2
62,229	+		GFF4425	0.47	-0.6
62,229	+		GFF4425	0.47	-0.8
62,229	+		GFF4425	0.47	-1.1
62,229	+		GFF4425	0.47	-0.3
62,229	+		GFF4425	0.47	-2.0
62,229	+		GFF4425	0.47	-0.5
62,229	+		GFF4425	0.47	-0.3
62,229	+		GFF4425	0.47	+0.2
62,230	-		GFF4425	0.47	+0.7
62,230	-		GFF4425	0.47	-1.8
62,230	-		GFF4425	0.47	+0.3
62,230	-		GFF4425	0.47	+0.8
62,230	-		GFF4425	0.47	+0.3
62,230	-		GFF4425	0.47	+0.4
62,230	-		GFF4425	0.47	+0.2
62,230	-		GFF4425	0.47	-0.1
62,230	-		GFF4425	0.47	-1.3
62,230	-		GFF4425	0.47	-0.1
62,230	-		GFF4425	0.47	-1.3
62,230	-		GFF4425	0.47	-0.1
62,230	-		GFF4425	0.47	-0.3
62,313	+		GFF4425	0.51	-0.2
62,313	+		GFF4425	0.51	+0.2
62,313	+		GFF4425	0.51	-0.3
62,313	+		GFF4425	0.51	+0.5
62,314	-		GFF4425	0.51	-0.5
62,314	-		GFF4425	0.51	-0.3
62,314	-		GFF4425	0.51	-0.7
62,314	-		GFF4425	0.51	+0.7
62,314	-		GFF4425	0.51	+0.1
62,314	-		GFF4425	0.51	+0.4
62,314	-		GFF4425	0.51	-0.1
62,314	-		GFF4425	0.51	-0.2
62,352	+		GFF4425	0.52	-0.2
62,352	+		GFF4425	0.52	-0.5
62,352	+		GFF4425	0.52	+0.2
62,352	+		GFF4425	0.52	-0.0
62,353	-		GFF4425	0.52	-0.8
62,353	-		GFF4425	0.52	+0.1
62,353	-		GFF4425	0.52	-0.7
62,353	-		GFF4425	0.52	-0.5
62,353	-		GFF4425	0.52	+0.3
62,353	-		GFF4425	0.52	-0.7
62,353	-		GFF4425	0.52	+0.6
62,353	-		GFF4425	0.52	-0.4
62,353	-		GFF4425	0.52	+0.7
62,376	+		GFF4425	0.53	-0.5
62,376	+		GFF4425	0.53	-0.4
62,376	+		GFF4425	0.53	+0.7
62,376	+		GFF4425	0.53	-0.4
62,376	+		GFF4425	0.53	-0.9
62,376	+		GFF4425	0.53	+0.6
62,376	+		GFF4425	0.53	-0.1
62,377	-		GFF4425	0.53	+0.1
62,377	-		GFF4425	0.53	-1.1
62,377	-		GFF4425	0.53	-0.1
62,377	-		GFF4425	0.53	+1.0
62,377	-		GFF4425	0.53	+0.1
62,377	-		GFF4425	0.53	+1.7
62,377	-		GFF4425	0.53	-1.0
62,377	-		GFF4425	0.53	-0.5
62,377	-		GFF4425	0.53	-0.1
62,377	-		GFF4425	0.53	+0.7
62,377	-		GFF4425	0.53	-1.4
62,377	-		GFF4425	0.53	+0.1
62,377	-		GFF4425	0.53	-0.3
62,442	+		GFF4425	0.56	-0.3
62,442	+		GFF4425	0.56	+0.5
62,442	+		GFF4425	0.56	-0.1
62,442	+		GFF4425	0.56	+0.4
62,442	+		GFF4425	0.56	-1.0
62,442	+		GFF4425	0.56	+0.5
62,442	+		GFF4425	0.56	-1.0
62,442	+		GFF4425	0.56	-0.2
62,442	+		GFF4425	0.56	-0.6
62,442	+		GFF4425	0.56	-0.4
62,442	+		GFF4425	0.56	+0.1
62,442	+		GFF4425	0.56	-1.0
62,442	+		GFF4425	0.56	+0.6
62,442	+		GFF4425	0.56	+0.3
62,442	+		GFF4425	0.56	+0.7
62,442	+		GFF4425	0.56	-0.1
62,442	+		GFF4425	0.56	-0.1
62,442	+		GFF4425	0.56	-0.1
62,442	+		GFF4425	0.56	-0.3
62,443	-		GFF4425	0.56	-0.5
62,443	-		GFF4425	0.56	-0.9
62,443	-		GFF4425	0.56	-0.9
62,443	-		GFF4425	0.56	+0.4
62,443	-		GFF4425	0.56	-0.1
62,443	-		GFF4425	0.56	+0.5
62,443	-		GFF4425	0.56	-0.3
62,443	-		GFF4425	0.56	-0.4
62,443	-		GFF4425	0.56	+0.3
62,443	-		GFF4425	0.56	-0.3
62,443	-		GFF4425	0.56	-2.4
62,443	-		GFF4425	0.56	+0.1
62,443	-		GFF4425	0.56	+0.7
62,443	-		GFF4425	0.56	-0.6
62,443	-		GFF4425	0.56	-0.0
62,443	-		GFF4425	0.56	-1.1
62,443	-		GFF4425	0.56	+1.1
62,443	-		GFF4425	0.56	+0.5
62,443	-		GFF4425	0.56	+0.4
62,443	-		GFF4425	0.56	-0.1
62,443	-		GFF4425	0.56	-0.5
62,443	-		GFF4425	0.56	-0.2
62,443	-		GFF4425	0.56	-0.3
62,443	-		GFF4425	0.56	+0.7
62,443	-		GFF4425	0.56	+0.7
62,443	-		GFF4425	0.56	+0.1
62,553	+		GFF4425	0.61	+0.1
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