Strain Fitness in Variovorax sp. SCN45 around GFF4423

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
58,473	+		GFF4422	0.18	+0.8
58,473	+		GFF4422	0.18	+0.2
58,473	+		GFF4422	0.18	+0.9
58,473	+		GFF4422	0.18	+0.4
58,473	+		GFF4422	0.18	-0.2
58,473	+		GFF4422	0.18	-0.6
58,474	-		GFF4422	0.18	-0.6
58,474	-		GFF4422	0.18	-1.3
58,474	-		GFF4422	0.18	-0.9
58,474	-		GFF4422	0.18	-2.1
58,474	-		GFF4422	0.18	+0.1
58,474	-		GFF4422	0.18	+0.3
58,601	+		GFF4422	0.31	-0.4
58,601	+		GFF4422	0.31	-0.2
58,601	+		GFF4422	0.31	+0.7
58,601	+		GFF4422	0.31	-0.2
58,602	-		GFF4422	0.31	+0.5
58,602	-		GFF4422	0.31	-0.3
58,602	-		GFF4422	0.31	+1.7
58,602	-		GFF4422	0.31	+1.0
58,646	+		GFF4422	0.35	+2.0
58,646	+		GFF4422	0.35	-0.6
58,646	+		GFF4422	0.35	+0.2
58,646	+		GFF4422	0.35	-0.5
58,647	-		GFF4422	0.35	-0.6
58,647	-		GFF4422	0.35	-1.5
58,647	-		GFF4422	0.35	-0.6
58,655	+		GFF4422	0.36	+0.9
58,655	+		GFF4422	0.36	-0.5
58,655	+		GFF4422	0.36	-1.5
58,655	+		GFF4422	0.36	+0.9
58,655	+		GFF4422	0.36	-0.1
58,655	+		GFF4422	0.36	+0.7
58,656	-		GFF4422	0.36	-0.1
58,656	-		GFF4422	0.36	+0.3
58,729	+		GFF4422	0.43	-0.8
58,729	+		GFF4422	0.43	-1.1
58,729	+		GFF4422	0.43	-0.0
58,730	-		GFF4422	0.44	+0.7
58,855	+		GFF4422	0.56	-1.7
58,856	+		GFF4422	0.56	-0.2
58,856	+		GFF4422	0.56	+0.1
58,856	+		GFF4422	0.56	+1.1
58,856	+		GFF4422	0.56	+1.5
58,856	+		GFF4422	0.56	+1.0
58,856	+		GFF4422	0.56	+2.0
58,856	+		GFF4422	0.56	-0.1
58,856	+		GFF4422	0.56	+0.1
58,856	+		GFF4422	0.56	+0.2
58,856	+		GFF4422	0.56	-0.4
58,856	+		GFF4422	0.56	-0.7
58,856	+		GFF4422	0.56	-0.1
58,856	+		GFF4422	0.56	-0.5
58,856	+		GFF4422	0.56	+0.2
58,856	+		GFF4422	0.56	+0.6
58,857	-		GFF4422	0.56	+0.9
58,857	-		GFF4422	0.56	-0.3
58,857	-		GFF4422	0.56	-0.2
58,857	-		GFF4422	0.56	-0.4
58,857	-		GFF4422	0.56	+2.1
58,857	-		GFF4422	0.56	+0.2
58,857	-		GFF4422	0.56	-0.7
58,857	-		GFF4422	0.56	+0.4
58,857	-		GFF4422	0.56	+0.4
58,857	-		GFF4422	0.56	-1.7
58,857	-		GFF4422	0.56	-1.1
58,857	-		GFF4422	0.56	-0.6
58,913	+		GFF4422	0.62	+0.9
59,015	+		GFF4422	0.72	+1.1
59,035	+		GFF4422	0.74	-0.3
59,035	+		GFF4422	0.74	-0.3
59,035	+		GFF4422	0.74	-0.0
59,035	+		GFF4422	0.74	+0.0
59,035	+		GFF4422	0.74	+1.0
59,036	-		GFF4422	0.74	-1.3
59,036	-		GFF4422	0.74	+0.9
59,036	-		GFF4422	0.74	+0.3
59,036	-		GFF4422	0.74	-0.3
59,081	+		GFF4422	0.79	-1.8
59,081	+		GFF4422	0.79	-0.9
59,081	+		GFF4422	0.79	+1.1
59,081	+		GFF4422	0.79	+0.1
59,081	+		GFF4422	0.79	-0.3
59,081	+		GFF4422	0.79	+0.4
59,081	+		GFF4422	0.79	+0.2
59,081	+		GFF4422	0.79	-0.7
59,081	+		GFF4422	0.79	+0.4
59,081	+		GFF4422	0.79	-0.6
59,081	+		GFF4422	0.79	+0.9
59,081	+		GFF4422	0.79	+0.0
59,081	+		GFF4422	0.79	-0.1
59,081	+		GFF4422	0.79	-0.8
59,081	+		GFF4422	0.79	+0.7
59,081	+		GFF4422	0.79	-0.4
59,081	+		GFF4422	0.79	-0.5
59,081	+		GFF4422	0.79	+0.4
59,081	+		GFF4422	0.79	+1.4
59,081	+		GFF4422	0.79	-1.3
59,081	+		GFF4422	0.79	-0.5
59,081	+		GFF4422	0.79	-0.5
59,081	+		GFF4422	0.79	-1.0
59,081	+		GFF4422	0.79	-2.4
59,081	+		GFF4422	0.79	-0.4
59,081	+		GFF4422	0.79	+0.2
59,081	+		GFF4422	0.79	-0.2
59,081	+		GFF4422	0.79	-0.1
59,082	-		GFF4422	0.79	-0.7
59,082	-		GFF4422	0.79	+0.9
59,082	-		GFF4422	0.79	-0.4
59,082	-		GFF4422	0.79	-0.0
59,082	-		GFF4422	0.79	-0.1
59,082	-		GFF4422	0.79	+0.2
59,082	-		GFF4422	0.79	+0.2
59,082	-		GFF4422	0.79	+0.2
59,082	-		GFF4422	0.79	-0.9
59,082	-		GFF4422	0.79	+0.1
59,082	-		GFF4422	0.79	-0.8
59,082	-		GFF4422	0.79	+0.6
59,082	-		GFF4422	0.79	-0.8
59,082	-		GFF4422	0.79	-0.6
59,082	-		GFF4422	0.79	+0.0
59,082	-		GFF4422	0.79	-1.0
59,082	-		GFF4422	0.79	-0.1
59,082	-		GFF4422	0.79	+1.2
59,082	-		GFF4422	0.79	-0.5
59,082	-		GFF4422	0.79	+0.1
59,082	-		GFF4422	0.79	+0.7
59,082	-		GFF4422	0.79	-0.2
59,084	-		GFF4422	0.79	-0.8
59,084	-		GFF4422	0.79	-0.7
59,084	-		GFF4422	0.79	+0.6
59,084	-		GFF4422	0.79	+0.0
59,084	-		GFF4422	0.79	-0.4
59,168	+		GFF4422	0.87	+0.5
59,168	+		GFF4422	0.87	+0.1
59,168	+		GFF4422	0.87	-0.3
59,168	+		GFF4422	0.87	-0.1
59,168	+		GFF4422	0.87	-0.7
59,169	-		GFF4422	0.87	-0.5
59,169	-		GFF4422	0.87	-0.1
59,169	-		GFF4422	0.87	-0.1
59,169	-		GFF4422	0.87	+0.7
59,169	-		GFF4422	0.87	-0.5
59,169	-		GFF4422	0.87	-0.2
59,169	-		GFF4422	0.87	-0.3
59,186	+		GFF4422	0.89	-0.6
59,186	+		GFF4422	0.89	-1.7
59,186	+		GFF4422	0.89	-0.2
59,186	+		GFF4422	0.89	-0.1
59,186	+		GFF4422	0.89	+0.1
59,186	+		GFF4422	0.89	-1.4
59,186	+		GFF4422	0.89	-0.2
59,186	+		GFF4422	0.89	+0.6
59,187	-		GFF4422	0.89	-0.4
59,187	-		GFF4422	0.89	+2.0
59,187	-		GFF4422	0.89	+0.3
59,187	-		GFF4422	0.89	-0.1
59,187	-		GFF4422	0.89	-0.0
59,187	-		GFF4422	0.89	+0.2
59,189	+		GFF4422	0.89	+0.3
59,189	+		GFF4422	0.89	+0.0
59,189	+		GFF4422	0.89	+0.9
59,189	+		GFF4422	0.89	-1.4
59,189	+		GFF4422	0.89	-1.4
59,189	+		GFF4422	0.89	-0.1
59,189	+		GFF4422	0.89	-0.1
59,189	+		GFF4422	0.89	+0.1
59,189	+		GFF4422	0.89	+0.0
59,189	+		GFF4422	0.89	+0.2
59,189	+		GFF4422	0.89	-0.1
59,189	+		GFF4422	0.89	-0.3
59,189	+		GFF4422	0.89	+0.5
59,189	+		GFF4422	0.89	-0.4
59,189	+		GFF4422	0.89	+1.1
59,189	+		GFF4422	0.89	+0.3
59,189	+		GFF4422	0.89	+0.0
59,189	+		GFF4422	0.89	+0.1
59,189	+		GFF4422	0.89	+0.7
59,189	+		GFF4422	0.89	-0.0
59,189	+		GFF4422	0.89	-0.9
59,189	+		GFF4422	0.89	-0.6
59,189	+		GFF4422	0.89	-0.4
59,189	+		GFF4422	0.89	-0.2
59,189	+		GFF4422	0.89	-0.3
59,190	-		GFF4422	0.90	-1.1
59,190	-		GFF4422	0.90	-1.0
59,190	-		GFF4422	0.90	-0.1
59,190	-		GFF4422	0.90	-1.7
59,190	-		GFF4422	0.90	-1.8
59,190	-		GFF4422	0.90	-0.6
59,190	-		GFF4422	0.90	-0.2
59,190	-		GFF4422	0.90	+0.3
59,190	-		GFF4422	0.90	-0.7
59,190	-		GFF4422	0.90	-0.7
59,190	-		GFF4422	0.90	+1.5
59,190	-		GFF4422	0.90	-0.8
59,190	-		GFF4422	0.90	-0.3
59,190	-		GFF4422	0.90	+0.0
59,190	-		GFF4422	0.90	-1.2
59,190	-		GFF4422	0.90	+0.1
59,190	-		GFF4422	0.90	+0.7
59,190	-		GFF4422	0.90	-0.2
59,190	-		GFF4422	0.90	-0.1
59,190	-		GFF4422	0.90	-1.1
59,190	-		GFF4422	0.90	-0.3
59,190	-		GFF4422	0.90	+0.1
59,190	-		GFF4422	0.90	+0.1
59,190	-		GFF4422	0.90	-0.6
59,190	-		GFF4422	0.90	+2.0
59,190	-		GFF4422	0.90	-0.7
59,190	-		GFF4422	0.90	+0.2
59,190	-		GFF4422	0.90	-0.5
59,190	-		GFF4422	0.90	-0.3
59,190	-		GFF4422	0.90	+0.1
59,190	-		GFF4422	0.90	+0.7
59,190	-		GFF4422	0.90	+0.2
59,190	-		GFF4422	0.90	+2.1
59,510	-		GFF4423	0.17	+1.1
59,510	-		GFF4423	0.17	-1.0
59,510	-		GFF4423	0.17	-1.0
59,510	-		GFF4423	0.17	-0.3
59,510	-		GFF4423	0.17	-1.5
59,510	-		GFF4423	0.17	-0.9
59,510	-		GFF4423	0.17	+2.7
59,510	-		GFF4423	0.17	+0.1
59,510	-		GFF4423	0.17	+0.9
59,510	-		GFF4423	0.17	-0.8
59,510	-		GFF4423	0.17	-0.1
59,563	+		GFF4423	0.21	+1.7
59,563	+		GFF4423	0.21	-0.2
59,563	+		GFF4423	0.21	+0.5
59,564	-		GFF4423	0.21	-0.7
59,564	-		GFF4423	0.21	-0.6
59,662	+		GFF4423	0.29	-0.5
59,662	+		GFF4423	0.29	-0.7
59,662	+		GFF4423	0.29	+0.4
59,662	+		GFF4423	0.29	+2.7
59,662	+		GFF4423	0.29	-0.1
59,662	+		GFF4423	0.29	-0.1
59,662	+		GFF4423	0.29	-0.3
59,662	+		GFF4423	0.29	+1.7
59,662	+		GFF4423	0.29	+0.2
59,662	+		GFF4423	0.29	-0.4
59,662	+		GFF4423	0.29	-0.8
59,662	+		GFF4423	0.29	-0.2
59,662	+		GFF4423	0.29	-0.3
59,662	+		GFF4423	0.29	-0.4
59,662	+		GFF4423	0.29	+1.1
59,662	+		GFF4423	0.29	-0.9
59,662	+		GFF4423	0.29	-0.3
59,663	-		GFF4423	0.29	-1.5
59,663	-		GFF4423	0.29	-1.3
59,663	-		GFF4423	0.29	-2.1
59,663	-		GFF4423	0.29	+0.1
59,663	-		GFF4423	0.29	-0.3
59,663	-		GFF4423	0.29	-1.9
59,663	-		GFF4423	0.29	+0.1
59,663	-		GFF4423	0.29	+1.9
59,663	-		GFF4423	0.29	-1.3
59,663	-		GFF4423	0.29	-2.0
59,663	-		GFF4423	0.29	-0.3
59,663	-		GFF4423	0.29	-0.7
59,663	-		GFF4423	0.29	-0.5
59,700	+		GFF4423	0.32	-0.7
59,701	-		GFF4423	0.32	-0.7
59,701	-		GFF4423	0.32	-0.1
59,925	+		GFF4423	0.50	+0.1
59,925	+		GFF4423	0.50	-0.3
59,925	+		GFF4423	0.50	+0.2
59,925	+		GFF4423	0.50	-0.3
59,971	+		GFF4423	0.53	-0.5
59,971	+		GFF4423	0.53	+0.6
59,971	+		GFF4423	0.53	-0.4
59,971	+		GFF4423	0.53	+0.4
60,070	+		GFF4423	0.61	-0.8
60,070	+		GFF4423	0.61	-0.3
60,070	+		GFF4423	0.61	+0.1
60,070	+		GFF4423	0.61	-0.8
60,070	+		GFF4423	0.61	+1.1
60,070	+		GFF4423	0.61	+0.9
60,070	+		GFF4423	0.61	-2.0
60,071	-		GFF4423	0.61	-0.8
60,071	-		GFF4423	0.61	-0.8
60,071	-		GFF4423	0.61	-0.3
60,071	-		GFF4423	0.61	-0.1
60,071	-		GFF4423	0.61	-0.9
60,071	-		GFF4423	0.61	-0.5
60,071	-		GFF4423	0.61	-0.2
60,071	-		GFF4423	0.61	-0.6
60,071	-		GFF4423	0.61	-0.3
60,071	-		GFF4423	0.61	+0.1
60,130	+		GFF4423	0.66	-0.3
60,130	+		GFF4423	0.66	-0.5
60,130	+		GFF4423	0.66	+0.4
60,130	+		GFF4423	0.66	+0.4
60,130	+		GFF4423	0.66	-0.8
60,130	+		GFF4423	0.66	+0.3
60,130	+		GFF4423	0.66	-0.2
60,130	+		GFF4423	0.66	+0.4
60,131	-		GFF4423	0.66	+0.1
60,148	+		GFF4423	0.67	-0.9
60,148	+		GFF4423	0.67	+0.0
60,148	+		GFF4423	0.67	-0.1
60,148	+		GFF4423	0.67	-0.3
60,148	+		GFF4423	0.67	-1.3
60,148	+		GFF4423	0.67	+0.4
60,149	-		GFF4423	0.67	-0.7
60,149	-		GFF4423	0.67	-0.0
60,149	-		GFF4423	0.67	-0.5
60,248	-		GFF4423	0.75	-0.2
60,248	-		GFF4423	0.75	+1.7
60,264	+		GFF4423	0.76	-2.8
60,264	+		GFF4423	0.76	+0.6
60,264	+		GFF4423	0.76	-1.0
60,264	+		GFF4423	0.76	+0.4
60,265	-		GFF4423	0.76	-0.3
60,265	-		GFF4423	0.76	+0.1
60,265	-		GFF4423	0.76	-1.1
60,265	-		GFF4423	0.76	+0.2
60,265	-		GFF4423	0.76	+0.2
60,265	-		GFF4423	0.76	-0.3
60,265	-		GFF4423	0.76	-0.0
60,265	-		GFF4423	0.76	-1.5
60,265	-		GFF4423	0.76	-1.4
60,265	-		GFF4423	0.76	-2.1
60,265	-		GFF4423	0.76	+0.1
60,265	-		GFF4423	0.76	+0.2
60,274	+		GFF4423	0.77	+0.2
60,274	+		GFF4423	0.77	-0.4
60,274	+		GFF4423	0.77	-0.3
60,274	+		GFF4423	0.77	+0.7
60,274	+		GFF4423	0.77	-0.5
60,274	+		GFF4423	0.77	+0.3
60,274	+		GFF4423	0.77	-0.5
60,275	-		GFF4423	0.77	+1.1
60,275	-		GFF4423	0.77	-0.2
60,275	-		GFF4423	0.77	-1.9
60,275	-		GFF4423	0.77	-0.1
60,275	-		GFF4423	0.77	+0.4
60,275	-		GFF4423	0.77	+0.7
60,526	+				+0.0
60,526	+				-0.1
60,527	-				+0.5
60,527	-				-0.2
60,527	-				+0.1
60,527	-				-0.5
60,527	-				+0.3
60,527	-				-0.4
60,541	+				+0.1
60,541	+				-1.1
60,541	+				+0.7
60,541	+				-1.4
60,541	+				-1.7
60,542	-				-0.3
60,542	-				+0.6
60,542	-				-1.0
60,542	-				+0.0
60,542	-				+0.3
60,542	-				-0.4
60,577	+				+0.3
60,577	+				+0.3
60,577	+				-0.3
60,577	+				+0.7
60,578	-				-0.5
60,660	+		GFF4424	0.40	-2.1
60,660	+		GFF4424	0.40	+1.1
60,684	+		GFF4424	0.50	+0.3
60,684	+		GFF4424	0.50	-2.5
60,684	+		GFF4424	0.50	+0.1
60,684	+		GFF4424	0.50	+0.4
60,684	+		GFF4424	0.50	-1.0
60,684	+		GFF4424	0.50	+0.7
60,684	+		GFF4424	0.50	-0.1
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