Strain Fitness in Variovorax sp. SCN45 around GFF4373

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
1,190	+		GFF4372	0.52	+0.1
1,190	+		GFF4372	0.52	+0.7
1,190	+		GFF4372	0.52	+0.1
1,190	+		GFF4372	0.52	-0.6
1,190	+		GFF4372	0.52	-0.5
1,191	-		GFF4372	0.52	-1.3
1,191	-		GFF4372	0.52	-0.2
1,191	-		GFF4372	0.52	+0.3
1,191	-		GFF4372	0.52	-0.9
1,191	-		GFF4372	0.52	+0.2
1,202	+		GFF4372	0.52	-0.8
1,203	-		GFF4372	0.52	-0.5
1,203	-		GFF4372	0.52	-0.3
1,229	+		GFF4372	0.54	-0.5
1,230	-		GFF4372	0.54	-1.3
1,230	-		GFF4372	0.54	-1.9
1,230	-		GFF4372	0.54	-1.3
1,230	-		GFF4372	0.54	-0.5
1,320	-		GFF4372	0.59	-0.1
1,401	-		GFF4372	0.63	-0.1
1,424	+		GFF4372	0.65	-0.3
1,425	-		GFF4372	0.65	+1.7
1,450	+		GFF4372	0.66	-0.2
1,450	+		GFF4372	0.66	+1.0
1,450	+		GFF4372	0.66	+0.0
1,450	+		GFF4372	0.66	+0.8
1,450	+		GFF4372	0.66	-0.7
1,450	+		GFF4372	0.66	-0.8
1,450	+		GFF4372	0.66	+2.2
1,451	-		GFF4372	0.66	-0.1
1,451	-		GFF4372	0.66	-0.7
1,451	-		GFF4372	0.66	+1.1
1,451	-		GFF4372	0.66	-0.1
1,459	+		GFF4372	0.67	-0.4
1,459	+		GFF4372	0.67	+0.2
1,459	+		GFF4372	0.67	+0.4
1,460	-		GFF4372	0.67	-0.8
1,499	+		GFF4372	0.69	-0.5
1,499	+		GFF4372	0.69	+1.7
1,500	-		GFF4372	0.69	-0.7
1,500	-		GFF4372	0.69	+0.8
1,505	+		GFF4372	0.69	+0.3
1,505	+		GFF4372	0.69	-0.4
1,505	+		GFF4372	0.69	-1.1
1,505	+		GFF4372	0.69	+0.2
1,505	+		GFF4372	0.69	-0.3
1,505	+		GFF4372	0.69	-0.4
1,505	+		GFF4372	0.69	+0.2
1,505	+		GFF4372	0.69	+0.1
1,506	-		GFF4372	0.69	-1.7
1,506	-		GFF4372	0.69	+0.0
1,506	-		GFF4372	0.69	-0.1
1,506	-		GFF4372	0.69	-0.5
1,506	-		GFF4372	0.69	+0.1
1,506	-		GFF4372	0.69	-0.0
1,508	+		GFF4372	0.69	+1.5
1,508	+		GFF4372	0.69	-0.0
1,508	+		GFF4372	0.69	+0.8
1,508	+		GFF4372	0.69	-0.8
1,509	-		GFF4372	0.69	-1.6
1,509	-		GFF4372	0.69	-0.1
1,528	+		GFF4372	0.70	-0.2
1,529	-		GFF4372	0.70	+0.1
1,559	+		GFF4372	0.72	-1.7
1,560	-		GFF4372	0.72	+0.3
1,560	-		GFF4372	0.72	-1.1
1,560	-		GFF4372	0.72	+0.3
1,560	-		GFF4372	0.72	-0.3
1,572	-		GFF4372	0.73	+1.7
1,619	+		GFF4372	0.75	-0.0
1,619	+		GFF4372	0.75	-1.9
1,619	+		GFF4372	0.75	-1.2
1,619	+		GFF4372	0.75	-0.2
1,619	+		GFF4372	0.75	-0.7
1,619	+		GFF4372	0.75	+1.7
1,620	-		GFF4372	0.75	+0.2
1,620	-		GFF4372	0.75	+1.7
1,620	-		GFF4372	0.75	+1.3
1,620	-		GFF4372	0.75	-1.1
1,637	+		GFF4372	0.76	-0.3
1,637	+		GFF4372	0.76	-0.6
1,733	+		GFF4372	0.82	-0.8
1,757	+		GFF4372	0.83	-0.6
1,757	+		GFF4372	0.83	+0.5
1,757	+		GFF4372	0.83	-0.6
1,757	+		GFF4372	0.83	+0.2
1,757	+		GFF4372	0.83	+0.5
1,757	+		GFF4372	0.83	+0.0
1,757	+		GFF4372	0.83	-2.1
1,757	+		GFF4372	0.83	-0.5
1,757	+		GFF4372	0.83	-0.2
1,757	+		GFF4372	0.83	+0.7
1,757	+		GFF4372	0.83	-0.2
1,758	-		GFF4372	0.83	-1.0
1,758	-		GFF4372	0.83	+0.7
1,758	-		GFF4372	0.83	-0.1
1,758	-		GFF4372	0.83	+0.9
1,758	-		GFF4372	0.83	-0.5
1,758	-		GFF4372	0.83	-0.3
1,758	-		GFF4372	0.83	-0.6
1,777	+		GFF4372	0.84	-0.8
1,810	+		GFF4372	0.86	-0.0
1,816	+		GFF4372	0.86	+0.5
1,816	+		GFF4372	0.86	-0.3
1,816	+		GFF4372	0.86	+0.5
1,816	+		GFF4372	0.86	+0.3
1,848	+		GFF4372	0.88	-0.6
1,848	+		GFF4372	0.88	+0.4
1,848	+		GFF4372	0.88	+2.7
1,848	+		GFF4372	0.88	+0.7
1,848	+		GFF4372	0.88	-0.0
1,848	+		GFF4372	0.88	-0.7
1,849	-		GFF4372	0.88	+0.7
1,849	-		GFF4372	0.88	-0.1
1,881	+		GFF4372	0.90	+0.7
1,881	+		GFF4372	0.90	+1.1
1,881	+		GFF4372	0.90	-0.4
1,881	+		GFF4372	0.90	-0.8
1,881	+		GFF4372	0.90	+0.3
1,881	+		GFF4372	0.90	-1.8
1,881	+		GFF4372	0.90	-0.5
1,881	+		GFF4372	0.90	+0.2
1,881	+		GFF4372	0.90	-0.9
1,881	+		GFF4372	0.90	+0.2
1,881	+		GFF4372	0.90	-0.3
1,882	-				+0.2
1,882	-				+0.7
1,882	-				-0.1
1,882	-				-1.1
1,882	-				-0.1
1,882	-				-2.3
1,882	-				+0.4
1,882	-				-1.3
1,882	-				-0.5
1,882	-				-0.2
1,882	-				-0.0
1,883	+				+0.1
1,883	+				+0.0
1,883	+				-1.7
1,883	+				-0.3
1,883	+				+0.5
1,883	+				-0.1
1,883	+				+0.4
1,884	-				-1.7
1,884	-				+1.3
1,884	-				+0.8
1,884	-				-0.7
1,884	-				+0.4
1,884	-				+0.2
1,884	-				+2.0
1,884	-				+1.1
1,884	-				-1.2
1,884	-				-2.1
1,934	+				-0.1
1,934	+				-0.0
1,934	+				+0.2
1,935	-				+0.2
1,935	-				-1.5
1,935	-				-0.7
1,935	-				+0.1
1,935	-				+1.4
1,946	+				-0.1
1,946	+				+0.2
1,946	+				-1.3
1,946	+				+0.5
1,946	+				+0.0
1,946	+				+0.5
1,946	+				-1.0
1,946	+				+0.4
1,946	+				+1.0
1,946	+				-0.2
1,946	+				-0.0
1,947	-				-0.4
1,947	-				-0.2
1,947	-				-0.7
1,947	-				+0.5
1,950	+				-0.7
1,950	+				-0.5
1,951	-				+1.1
1,951	-				-1.8
1,951	-				+1.1
1,951	-				+0.4
1,951	-				-0.2
2,065	+				-1.4
2,065	+				+0.7
2,065	+				+0.8
2,065	+				-0.6
2,065	+				+0.1
2,066	-				-0.8
2,066	-				+0.2
2,066	-				-0.5
2,066	-				-0.8
2,066	-				+0.1
2,066	-				-0.7
2,066	-				-0.3
2,066	-				-0.4
2,172	-				-0.5
2,172	-				-0.5
2,190	+				-1.2
2,190	+				-1.1
2,190	+				+0.5
2,190	+				-0.5
2,191	-				-0.2
2,191	-				-0.6
2,191	-				+0.1
2,201	+				-1.9
2,227	+				-0.4
2,227	+				-0.6
2,227	+				+0.7
2,227	+				+0.3
2,228	-				-0.3
2,228	-				+0.7
2,228	-				-0.5
2,239	+				+0.1
2,240	-				+0.7
2,274	+				-0.1
2,274	+				-1.0
2,274	+				-1.1
2,274	+				-0.7
2,275	-				+0.9
2,275	-				+1.1
2,275	-				+0.1
2,308	+		GFF4373	0.11	-2.2
2,308	+		GFF4373	0.11	+0.3
2,308	+		GFF4373	0.11	-0.5
2,308	+		GFF4373	0.11	-0.7
2,308	+		GFF4373	0.11	-0.1
2,308	+		GFF4373	0.11	+0.8
2,308	+		GFF4373	0.11	+0.5
2,308	+		GFF4373	0.11	-0.1
2,309	-		GFF4373	0.11	-0.7
2,309	-		GFF4373	0.11	-0.2
2,309	-		GFF4373	0.11	-0.9
2,369	+		GFF4373	0.14	-0.9
2,370	-		GFF4373	0.14	+0.7
2,407	+		GFF4373	0.16	-0.5
2,408	-		GFF4373	0.16	+0.2
2,408	-		GFF4373	0.16	+1.9
2,470	+		GFF4373	0.19	-1.6
2,470	+		GFF4373	0.19	-1.8
2,470	+		GFF4373	0.19	-0.3
2,470	+		GFF4373	0.19	+0.7
2,470	+		GFF4373	0.19	+0.2
2,471	-		GFF4373	0.19	-0.9
2,471	-		GFF4373	0.19	-0.7
2,471	-		GFF4373	0.19	+0.1
2,471	-		GFF4373	0.19	-0.5
2,471	-		GFF4373	0.19	-0.7
2,471	-		GFF4373	0.19	-0.4
2,474	+		GFF4373	0.19	-0.1
2,474	+		GFF4373	0.19	+0.5
2,474	+		GFF4373	0.19	-0.0
2,474	+		GFF4373	0.19	-0.6
2,475	-		GFF4373	0.19	-0.1
2,475	-		GFF4373	0.19	-0.0
2,475	-		GFF4373	0.19	+0.1
2,475	-		GFF4373	0.19	+0.1
2,475	-		GFF4373	0.19	-0.9
2,633	-		GFF4373	0.27	-0.1
2,673	+		GFF4373	0.28	+0.7
2,674	-		GFF4373	0.29	-0.4
2,760	+		GFF4373	0.33	-0.4
2,760	+		GFF4373	0.33	-0.6
2,760	+		GFF4373	0.33	+0.1
2,761	-		GFF4373	0.33	+2.4
2,761	-		GFF4373	0.33	-0.3
2,761	-		GFF4373	0.33	-0.2
2,877	+		GFF4373	0.38	-0.4
2,877	+		GFF4373	0.38	-0.4
2,877	+		GFF4373	0.38	-0.4
2,878	-		GFF4373	0.38	+1.4
2,878	-		GFF4373	0.38	-0.3
2,878	-		GFF4373	0.38	-0.3
2,878	-		GFF4373	0.38	-0.7
2,980	+		GFF4373	0.43	-1.1
2,980	+		GFF4373	0.43	-0.6
2,980	+		GFF4373	0.43	-1.1
2,980	+		GFF4373	0.43	-1.0
2,980	+		GFF4373	0.43	-1.0
2,981	-		GFF4373	0.43	-0.2
2,981	-		GFF4373	0.43	-0.3
2,981	-		GFF4373	0.43	+0.2
3,014	+		GFF4373	0.44	-0.3
3,015	-		GFF4373	0.44	-0.7
3,015	-		GFF4373	0.44	+0.0
3,015	-		GFF4373	0.44	-0.2
3,019	-		GFF4373	0.45	+0.2
3,047	+		GFF4373	0.46	-1.1
3,047	+		GFF4373	0.46	+0.4
3,048	-		GFF4373	0.46	-0.2
3,048	-		GFF4373	0.46	+1.2
3,048	-		GFF4373	0.46	+0.5
3,048	-		GFF4373	0.46	+0.4
3,048	-		GFF4373	0.46	-1.5
3,048	-		GFF4373	0.46	+0.1
3,067	+		GFF4373	0.47	-1.1
3,067	+		GFF4373	0.47	+0.5
3,067	+		GFF4373	0.47	-0.2
3,067	+		GFF4373	0.47	-0.9
3,068	-		GFF4373	0.47	+0.0
3,068	-		GFF4373	0.47	-0.4
3,068	-		GFF4373	0.47	+0.1
3,088	+		GFF4373	0.48	-0.7
3,088	+		GFF4373	0.48	+0.0
3,125	+		GFF4373	0.50	-0.4
3,125	+		GFF4373	0.50	+0.7
3,125	+		GFF4373	0.50	-1.7
3,125	+		GFF4373	0.50	-1.2
3,126	-		GFF4373	0.50	+0.2
3,126	-		GFF4373	0.50	-0.3
3,126	-		GFF4373	0.50	-0.1
3,126	-		GFF4373	0.50	+0.1
3,126	-		GFF4373	0.50	-0.1
3,126	-		GFF4373	0.50	-0.4
3,190	+		GFF4373	0.53	-0.7
3,191	-		GFF4373	0.53	+0.1
3,191	-		GFF4373	0.53	+0.1
3,191	-		GFF4373	0.53	+0.4
3,191	-		GFF4373	0.53	+1.7
3,225	+		GFF4373	0.54	-0.3
3,225	+		GFF4373	0.54	+1.2
3,225	+		GFF4373	0.54	-0.2
3,225	+		GFF4373	0.54	-0.2
3,225	+		GFF4373	0.54	-0.3
3,225	+		GFF4373	0.54	-0.7
3,226	-		GFF4373	0.54	-1.3
3,367	+		GFF4373	0.61	-0.1
3,367	+		GFF4373	0.61	+0.7
3,367	+		GFF4373	0.61	+0.1
3,367	+		GFF4373	0.61	+1.2
3,368	-		GFF4373	0.61	-0.8
3,368	-		GFF4373	0.61	+0.1
3,368	-		GFF4373	0.61	+0.8
3,368	-		GFF4373	0.61	-0.6
3,368	-		GFF4373	0.61	+0.7
3,368	-		GFF4373	0.61	+1.0
3,498	+		GFF4373	0.67	+0.2
3,498	+		GFF4373	0.67	+0.3
3,498	+		GFF4373	0.67	-0.6
3,498	+		GFF4373	0.67	-0.6
3,498	+		GFF4373	0.67	-0.3
3,498	+		GFF4373	0.67	-0.9
3,498	+		GFF4373	0.67	+1.1
3,498	+		GFF4373	0.67	-1.0
3,498	+		GFF4373	0.67	+0.7
3,498	+		GFF4373	0.67	-0.1
3,498	+		GFF4373	0.67	-0.4
3,498	+		GFF4373	0.67	-0.5
3,498	+		GFF4373	0.67	+0.1
3,498	+		GFF4373	0.67	+2.3
3,498	+		GFF4373	0.67	-0.7
3,498	+		GFF4373	0.67	-0.0
3,498	+		GFF4373	0.67	+1.1
3,499	-		GFF4373	0.67	+0.2
3,499	-		GFF4373	0.67	+2.0
3,499	-		GFF4373	0.67	-0.1
3,499	-		GFF4373	0.67	-0.0
3,499	-		GFF4373	0.67	-0.8
3,499	-		GFF4373	0.67	+0.1
3,499	-		GFF4373	0.67	-0.6
3,499	-		GFF4373	0.67	-0.3
3,499	-		GFF4373	0.67	-0.1
3,499	-		GFF4373	0.67	-0.2
3,499	-		GFF4373	0.67	-0.1
3,499	-		GFF4373	0.67	+1.1
3,499	-		GFF4373	0.67	-0.3
3,499	-		GFF4373	0.67	-1.5
3,499	-		GFF4373	0.67	+0.3
3,499	-		GFF4373	0.67	+0.1
3,499	-		GFF4373	0.67	-0.0
3,499	-		GFF4373	0.67	-0.7
3,499	-		GFF4373	0.67	+0.2
3,499	-		GFF4373	0.67	+0.3
3,499	-		GFF4373	0.67	-1.3
3,500	+		GFF4373	0.67	-0.3
3,501	-		GFF4373	0.67	+0.6
3,564	+		GFF4373	0.70	+0.5
3,564	+		GFF4373	0.70	-0.8
3,564	+		GFF4373	0.70	-0.7
3,565	-		GFF4373	0.70	-0.2
3,565	-		GFF4373	0.70	-0.2
3,565	-		GFF4373	0.70	+0.9
3,645	-		GFF4373	0.74	+0.4
3,706	+		GFF4373	0.77	-0.2
3,706	+		GFF4373	0.77	-1.1
3,706	+		GFF4373	0.77	+0.6
3,706	+		GFF4373	0.77	+0.6
3,706	+		GFF4373	0.77	+0.4
3,706	+		GFF4373	0.77	+0.0
3,706	+		GFF4373	0.77	+0.6
3,706	+		GFF4373	0.77	+0.4
3,706	+		GFF4373	0.77	-0.2
3,706	+		GFF4373	0.77	+0.2
3,706	+		GFF4373	0.77	-0.9
3,706	+		GFF4373	0.77	-0.0
3,706	+		GFF4373	0.77	-1.0
3,706	+		GFF4373	0.77	-0.5
3,706	+		GFF4373	0.77	-1.5
3,706	+		GFF4373	0.77	-0.3
3,707	-		GFF4373	0.77	+1.7
3,707	-		GFF4373	0.77	-0.7
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