Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4265 and GFF4266 are separated by 63 nucleotides GFF4266 and GFF4267 are separated by 132 nucleotides
GFF4265 - hypothetical protein, at 185,053 to 186,315
GFF4265
GFF4266 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 186,379 to 187,401
GFF4266
GFF4267 - Transcriptional regulator, AraC family, at 187,534 to 188,505
GFF4267
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.131 kb on + strand, within GFF4265 at 186.132 kb on - strand, within GFF4265 at 186.132 kb on - strand, within GFF4265 at 186.440 kb on + strand at 186.440 kb on + strand at 186.440 kb on + strand at 186.441 kb on - strand at 186.545 kb on + strand, within GFF4266 at 186.545 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.623 kb on + strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 186.624 kb on - strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.136 kb on + strand, within GFF4266 at 187.266 kb on - strand, within GFF4266 at 187.397 kb on + strand at 187.841 kb on + strand, within GFF4267 at 187.842 kb on - strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.035 kb on + strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.036 kb on - strand, within GFF4267 at 188.088 kb on - strand, within GFF4267
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 186,131 + GFF4265 0.85 +0.9 186,132 - GFF4265 0.85 -0.4 186,132 - GFF4265 0.85 -0.9 186,440 + -0.4 186,440 + +0.4 186,440 + +0.0 186,441 - +0.7 186,545 + GFF4266 0.16 +0.3 186,545 + GFF4266 0.16 +0.1 186,623 + GFF4266 0.24 +0.5 186,623 + GFF4266 0.24 -0.2 186,623 + GFF4266 0.24 -0.4 186,623 + GFF4266 0.24 +0.5 186,624 - GFF4266 0.24 -1.6 186,624 - GFF4266 0.24 +1.2 186,624 - GFF4266 0.24 -0.8 186,624 - GFF4266 0.24 -1.1 187,136 + GFF4266 0.74 +0.2 187,136 + GFF4266 0.74 +1.4 187,136 + GFF4266 0.74 +0.3 187,266 - GFF4266 0.87 +2.1 187,397 + -0.4 187,841 + GFF4267 0.32 -1.8 187,842 - GFF4267 0.32 -0.1 188,035 + GFF4267 0.52 -0.9 188,035 + GFF4267 0.52 +0.0 188,035 + GFF4267 0.52 -0.4 188,036 - GFF4267 0.52 -0.6 188,036 - GFF4267 0.52 -1.1 188,036 - GFF4267 0.52 -0.7 188,036 - GFF4267 0.52 +0.5 188,036 - GFF4267 0.52 +0.8 188,036 - GFF4267 0.52 -2.2 188,036 - GFF4267 0.52 -0.4 188,036 - GFF4267 0.52 -1.7 188,088 - GFF4267 0.57 -0.9
Or see this region's nucleotide sequence