Strain Fitness in Variovorax sp. SCN45 around GFF4128

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
30,736	-		GFF4127	0.19	-0.2
30,864	+		GFF4127	0.30	-0.4
31,076	-		GFF4127	0.50	-0.3
31,755	+				-0.2
31,755	+				+2.2
31,755	+				+0.4
31,756	-				+0.5
31,756	-				+0.1
31,896	+		GFF4128	0.14	-0.1
31,897	-		GFF4128	0.14	+0.1
31,948	-		GFF4128	0.17	+0.0
31,948	-		GFF4128	0.17	-0.4
32,041	-		GFF4128	0.23	+1.6
32,041	-		GFF4128	0.23	+0.3
32,041	-		GFF4128	0.23	-1.1
32,262	+		GFF4128	0.37	+0.6
32,263	-		GFF4128	0.37	+0.4
32,263	-		GFF4128	0.37	-0.7
32,317	-		GFF4128	0.40	+1.0
32,428	+		GFF4128	0.47	+1.1
32,436	+		GFF4128	0.47	+2.6
32,437	-		GFF4128	0.47	+1.6
32,601	+		GFF4128	0.57	+0.1
32,601	+		GFF4128	0.57	-0.2
32,640	+		GFF4128	0.60	+0.0
32,641	-		GFF4128	0.60	-0.7
32,740	-		GFF4128	0.66	+1.6
32,829	+		GFF4128	0.71	-0.1
32,829	+		GFF4128	0.71	+0.8
32,830	-		GFF4128	0.71	-1.2
32,889	+		GFF4128	0.75	-1.0
33,052	-		GFF4128	0.85	-0.3
33,052	-		GFF4128	0.85	-0.7
33,354	+				-1.6
33,354	+				+0.0
33,657	-		GFF4129	0.22	-1.4
33,672	-		GFF4129	0.23	+0.0
33,737	+		GFF4129	0.27	+0.1
33,738	-		GFF4129	0.27	+0.0
34,226	+		GFF4129	0.57	-0.1
34,226	+		GFF4129	0.57	+0.5
34,226	+		GFF4129	0.57	+0.0
34,226	+		GFF4129	0.57	-0.7
34,226	+		GFF4129	0.57	+1.0
34,227	-		GFF4129	0.57	-0.4
34,227	-		GFF4129	0.57	-0.3
34,247	+		GFF4129	0.58	-0.5