Strain Fitness in Variovorax sp. SCN45 around GFF4106

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4104 and GFF4105 overlap by 4 nucleotidesGFF4105 and GFF4106 are separated by 25 nucleotidesGFF4106 and GFF4107 overlap by 14 nucleotidesGFF4107 and GFF4108 are separated by 7 nucleotides GFF4104 - Cystathionine beta-lyase (EC 4.4.1.8), at 7,628 to 8,842 GFF4104 GFF4105 - Cysteine dioxygenase (EC 1.13.11.20), at 8,839 to 9,480 GFF4105 GFF4106 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 9,506 to 10,369 GFF4106 GFF4107 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 10,356 to 11,159 GFF4107 GFF4108 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 11,167 to 11,913 GFF4108 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1at 10.053 kb on + strand, within GFF4106at 10.054 kb on - strand, within GFF4106at 10.561 kb on + strand, within GFF4107at 10.811 kb on - strand, within GFF4107

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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10,053 + GFF4106 0.63 -1.4
10,054 - GFF4106 0.63 -1.1
10,561 + GFF4107 0.25 +0.2
10,811 - GFF4107 0.57 -0.5

Or see this region's nucleotide sequence