Strain Fitness in Variovorax sp. SCN45 around GFF3848

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
48,135	+		GFF3847	0.18	+1.5
48,136	-		GFF3847	0.18	-0.1
48,136	-		GFF3847	0.18	-0.1
48,136	-		GFF3847	0.18	+0.2
48,537	+		GFF3847	0.54	+0.7
48,537	+		GFF3847	0.54	-0.3
48,537	+		GFF3847	0.54	-0.2
48,537	+		GFF3847	0.54	+0.8
48,537	+		GFF3847	0.54	-1.2
48,538	-		GFF3847	0.54	+1.3
48,538	-		GFF3847	0.54	+0.5
48,538	-		GFF3847	0.54	-0.3
48,538	-		GFF3847	0.54	-1.4
48,538	-		GFF3847	0.54	+2.3
48,538	-		GFF3847	0.54	-0.4
48,538	-		GFF3847	0.54	+1.0
48,538	-		GFF3847	0.54	-0.7
48,538	-		GFF3847	0.54	-1.1
48,538	-		GFF3847	0.54	-0.1
48,538	-		GFF3847	0.54	-0.1
48,538	-		GFF3847	0.54	-0.7
48,538	-		GFF3847	0.54	-0.8
48,603	+		GFF3847	0.60	-0.3
48,603	+		GFF3847	0.60	-0.4
48,603	+		GFF3847	0.60	+0.6
48,603	+		GFF3847	0.60	-0.8
48,603	+		GFF3847	0.60	-0.4
48,603	+		GFF3847	0.60	-0.9
48,603	+		GFF3847	0.60	-0.1
48,603	+		GFF3847	0.60	-0.0
48,603	+		GFF3847	0.60	+0.4
48,603	+		GFF3847	0.60	-0.3
48,604	-		GFF3847	0.60	+0.7
48,604	-		GFF3847	0.60	-1.2
48,604	-		GFF3847	0.60	-0.8
48,604	-		GFF3847	0.60	+0.2
48,604	-		GFF3847	0.60	-0.4
48,840	+		GFF3847	0.81	-0.1
48,840	+		GFF3847	0.81	-0.1
48,840	+		GFF3847	0.81	-0.8
48,840	+		GFF3847	0.81	-0.6
48,840	+		GFF3847	0.81	-0.3
48,840	+		GFF3847	0.81	-0.9
48,840	+		GFF3847	0.81	-0.3
48,840	+		GFF3847	0.81	+0.4
48,841	-		GFF3847	0.81	+0.4
48,841	-		GFF3847	0.81	-0.2
48,841	-		GFF3847	0.81	-0.6
48,980	+				+0.6
48,980	+				-0.8
48,980	+				-0.7
48,980	+				-1.9
48,981	-				-0.3
48,981	-				+0.3
48,981	-				-0.5
48,981	-				-0.5
48,981	-				-0.0
49,061	+				+0.2
49,061	+				-1.1
49,061	+				-0.3
49,061	+				-1.6
49,061	+				-1.1
49,061	+				-1.8
49,061	+				-0.1
49,062	-				-0.3
49,062	-				+0.5
49,062	-				-0.2
49,062	-				+0.1
49,102	+				-1.1
49,103	-				+0.4
49,103	-				-1.5
49,255	+		GFF3848	0.32	+0.5
49,255	+		GFF3848	0.32	-0.4
49,256	-		GFF3848	0.32	-0.0
49,256	-		GFF3848	0.32	-0.3
49,276	+		GFF3848	0.35	-1.0
49,282	+		GFF3848	0.36	+0.5
49,283	-		GFF3848	0.36	-0.9
49,283	-		GFF3848	0.36	-0.1
49,283	-		GFF3848	0.36	+0.5
49,283	-		GFF3848	0.36	-1.1
49,288	+		GFF3848	0.37	-1.4
49,288	+		GFF3848	0.37	+0.8
49,288	+		GFF3848	0.37	-0.2
49,288	+		GFF3848	0.37	-1.2
49,288	+		GFF3848	0.37	-0.3
49,288	+		GFF3848	0.37	-0.4
49,288	+		GFF3848	0.37	+0.1
49,288	+		GFF3848	0.37	-0.1
49,288	+		GFF3848	0.37	-1.2
49,288	+		GFF3848	0.37	+0.3
49,288	+		GFF3848	0.37	+0.0
49,289	-		GFF3848	0.37	-0.6
49,289	-		GFF3848	0.37	-1.4
49,289	-		GFF3848	0.37	+0.1
49,289	-		GFF3848	0.37	-0.3
49,289	-		GFF3848	0.37	-0.6
49,289	-		GFF3848	0.37	+1.1
49,289	-		GFF3848	0.37	-0.8
49,289	-		GFF3848	0.37	-0.1
49,289	-		GFF3848	0.37	-0.4
49,289	-		GFF3848	0.37	+0.0
49,289	-		GFF3848	0.37	-0.8
49,289	-		GFF3848	0.37	-1.4
49,455	+		GFF3848	0.62	-1.8
49,456	-		GFF3848	0.62	+0.9
49,456	-		GFF3848	0.62	+0.4
49,456	-		GFF3848	0.62	-1.3
49,612	+		GFF3848	0.85	+1.1
49,612	+		GFF3848	0.85	-0.2
49,612	+		GFF3848	0.85	+0.8
49,612	+		GFF3848	0.85	-0.1
49,612	+		GFF3848	0.85	-0.6
49,612	+		GFF3848	0.85	-0.2
49,612	+		GFF3848	0.85	-0.0
49,612	+		GFF3848	0.85	-1.8
49,612	+		GFF3848	0.85	+0.6
49,613	-		GFF3848	0.85	+0.3
49,613	-		GFF3848	0.85	-0.6
49,613	-		GFF3848	0.85	-1.7
49,613	-		GFF3848	0.85	-0.3
49,613	-		GFF3848	0.85	-0.2
49,613	-		GFF3848	0.85	-0.2
49,613	-		GFF3848	0.85	-0.9
49,613	-		GFF3848	0.85	-0.0
49,613	-		GFF3848	0.85	+1.3
49,613	-		GFF3848	0.85	-0.7
49,613	-		GFF3848	0.85	+0.4
49,695	+				+0.1
49,695	+				+1.2
49,696	-				-0.6
49,696	-				-0.7
49,972	+		GFF3849	0.65	+0.1
49,972	+		GFF3849	0.65	+0.2
49,972	+		GFF3849	0.65	-0.3
49,972	+		GFF3849	0.65	-0.9
50,067	+				-0.6
50,067	+				+0.7
50,067	+				+1.4
50,067	+				-1.3
50,067	+				+0.3
50,068	-				+0.3
50,068	-				-0.3
50,068	-				-0.5
50,068	-				+0.7
50,068	-				+0.4
50,068	-				+0.5
50,558	+		GFF3850	0.45	+0.0
50,558	+		GFF3850	0.45	+0.2
50,558	+		GFF3850	0.45	+1.0
50,558	+		GFF3850	0.45	-0.5
50,558	+		GFF3850	0.45	+0.4
50,558	+		GFF3850	0.45	-1.4
50,558	+		GFF3850	0.45	-0.1
50,558	+		GFF3850	0.45	-0.6
50,558	+		GFF3850	0.45	-0.3
50,558	+		GFF3850	0.45	+0.4
50,558	+		GFF3850	0.45	+0.4
50,559	-		GFF3850	0.45	-1.0
50,559	-		GFF3850	0.45	-1.3
50,559	-		GFF3850	0.45	-1.3
50,559	-		GFF3850	0.45	-0.8
50,559	-		GFF3850	0.45	-0.1
50,559	-		GFF3850	0.45	+0.7
50,559	-		GFF3850	0.45	-0.4
50,573	+		GFF3850	0.46	-0.1
50,573	+		GFF3850	0.46	-0.9
50,573	+		GFF3850	0.46	-0.5
50,573	+		GFF3850	0.46	+0.1
50,573	+		GFF3850	0.46	+1.2
50,573	+		GFF3850	0.46	+1.5
50,574	-		GFF3850	0.46	-0.4
50,574	-		GFF3850	0.46	-1.2
50,574	-		GFF3850	0.46	-0.9
50,574	-		GFF3850	0.46	-0.8
50,574	-		GFF3850	0.46	-0.6
50,574	-		GFF3850	0.46	+0.1
50,574	-		GFF3850	0.46	-0.8
50,609	+		GFF3850	0.50	-0.7
50,609	+		GFF3850	0.50	-0.8
50,609	+		GFF3850	0.50	+0.0
50,609	+		GFF3850	0.50	+0.7
50,610	-		GFF3850	0.50	+0.8
50,610	-		GFF3850	0.50	-0.1
50,610	-		GFF3850	0.50	-0.5
50,610	-		GFF3850	0.50	-0.3
50,612	+		GFF3850	0.50	-0.1
50,612	+		GFF3850	0.50	+0.7
50,612	+		GFF3850	0.50	+0.1
50,612	+		GFF3850	0.50	+0.0
50,612	+		GFF3850	0.50	+0.7
50,612	+		GFF3850	0.50	+0.7
50,612	+		GFF3850	0.50	-0.5
50,612	+		GFF3850	0.50	-0.8
50,612	+		GFF3850	0.50	+0.6
50,612	+		GFF3850	0.50	+0.5
50,612	+		GFF3850	0.50	+0.1
50,612	+		GFF3850	0.50	+0.9
50,612	+		GFF3850	0.50	+0.4
50,612	+		GFF3850	0.50	+0.2
50,612	+		GFF3850	0.50	+0.7
50,612	+		GFF3850	0.50	+1.5
50,612	+		GFF3850	0.50	+0.0
50,612	+		GFF3850	0.50	-0.7
50,612	+		GFF3850	0.50	-0.5
50,613	-		GFF3850	0.50	+0.3
50,613	-		GFF3850	0.50	+1.3
50,613	-		GFF3850	0.50	-1.0
50,613	-		GFF3850	0.50	-1.3
50,613	-		GFF3850	0.50	-1.1
50,613	-		GFF3850	0.50	+0.8
50,613	-		GFF3850	0.50	+0.8
50,613	-		GFF3850	0.50	+1.1
50,613	-		GFF3850	0.50	-0.6
50,613	-		GFF3850	0.50	+0.5
50,613	-		GFF3850	0.50	-0.9
50,613	-		GFF3850	0.50	-0.9
50,613	-		GFF3850	0.50	-0.2
50,613	-		GFF3850	0.50	-0.5
50,613	-		GFF3850	0.50	+0.6
50,613	-		GFF3850	0.50	+0.1
50,613	-		GFF3850	0.50	+0.9
50,613	-		GFF3850	0.50	-0.1
50,639	+		GFF3850	0.53	-0.3
50,639	+		GFF3850	0.53	-0.8
50,639	+		GFF3850	0.53	-0.3
50,639	+		GFF3850	0.53	+0.3
50,639	+		GFF3850	0.53	-0.3
50,639	+		GFF3850	0.53	+0.0
50,639	+		GFF3850	0.53	-0.5
50,639	+		GFF3850	0.53	-1.8
50,639	+		GFF3850	0.53	+0.9
50,639	+		GFF3850	0.53	-0.5
50,640	-		GFF3850	0.53	-1.0
50,640	-		GFF3850	0.53	+0.6
50,640	-		GFF3850	0.53	-0.3
50,640	-		GFF3850	0.53	-0.5
50,640	-		GFF3850	0.53	-0.4