Strain Fitness in Variovorax sp. SCN45 around GFF37

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF36 and GFF37 overlap by 4 nucleotidesGFF37 and GFF38 are separated by 12 nucleotidesGFF38 and GFF39 are separated by 44 nucleotides GFF36 - Similar to Agmatine deiminase, at 39,121 to 40,245 GFF36 GFF37 - Similar to Agmatine deiminase, at 40,242 to 41,195 GFF37 GFF38 - no description, at 41,208 to 41,465 GFF38 GFF39 - Transcriptional regulator, LysR family, at 41,510 to 42,370 GFF39 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.509 kb on + strand, within GFF36at 39.509 kb on + strand, within GFF36at 39.755 kb on + strand, within GFF36at 39.755 kb on + strand, within GFF36at 39.756 kb on - strand, within GFF36at 39.756 kb on - strand, within GFF36at 40.429 kb on + strand, within GFF37at 40.429 kb on + strand, within GFF37at 40.430 kb on - strand, within GFF37at 40.430 kb on - strand, within GFF37at 40.430 kb on - strand, within GFF37at 40.630 kb on + strand, within GFF37at 40.889 kb on + strand, within GFF37at 40.890 kb on - strand, within GFF37at 41.102 kb on - strandat 41.102 kb on - strandat 41.169 kb on + strandat 41.420 kb on + strand, within GFF38at 41.420 kb on + strand, within GFF38at 41.420 kb on + strand, within GFF38at 41.421 kb on - strand, within GFF38at 41.421 kb on - strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.526 kb on + strandat 41.526 kb on + strandat 41.526 kb on + strandat 41.526 kb on + strandat 41.527 kb on - strandat 41.527 kb on - strandat 41.527 kb on - strandat 41.623 kb on - strand, within GFF39at 41.739 kb on + strand, within GFF39at 41.740 kb on - strand, within GFF39at 41.740 kb on - strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.962 kb on - strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.102 kb on + strand, within GFF39

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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39,296 + GFF36 0.16 -1.4
39,296 + GFF36 0.16 +0.4
39,296 + GFF36 0.16 -0.0
39,296 + GFF36 0.16 +0.6
39,296 + GFF36 0.16 -0.3
39,296 + GFF36 0.16 +0.3
39,296 + GFF36 0.16 -0.0
39,296 + GFF36 0.16 +0.8
39,296 + GFF36 0.16 +0.2
39,296 + GFF36 0.16 -0.8
39,297 - GFF36 0.16 -0.3
39,297 - GFF36 0.16 -0.7
39,297 - GFF36 0.16 +2.2
39,297 - GFF36 0.16 -0.3
39,297 - GFF36 0.16 +0.3
39,297 - GFF36 0.16 -1.7
39,297 - GFF36 0.16 +0.1
39,297 - GFF36 0.16 -0.1
39,297 - GFF36 0.16 +1.2
39,297 - GFF36 0.16 +0.2
39,297 - GFF36 0.16 +0.4
39,297 - GFF36 0.16 +1.6
39,308 + GFF36 0.17 -0.9
39,308 + GFF36 0.17 -0.2
39,308 + GFF36 0.17 +0.2
39,308 + GFF36 0.17 +0.6
39,308 + GFF36 0.17 -1.9
39,308 + GFF36 0.17 +0.5
39,308 + GFF36 0.17 -0.1
39,308 + GFF36 0.17 -0.5
39,309 - GFF36 0.17 -0.2
39,309 - GFF36 0.17 +0.4
39,309 - GFF36 0.17 -0.5
39,309 - GFF36 0.17 -0.8
39,309 - GFF36 0.17 +0.9
39,309 - GFF36 0.17 +0.2
39,309 - GFF36 0.17 +0.4
39,449 + GFF36 0.29 -0.8
39,449 + GFF36 0.29 -0.4
39,449 + GFF36 0.29 -0.3
39,450 - GFF36 0.29 -0.1
39,450 - GFF36 0.29 +0.5
39,450 - GFF36 0.29 -0.4
39,450 - GFF36 0.29 -0.2
39,509 + GFF36 0.34 -0.5
39,509 + GFF36 0.34 -0.4
39,755 + GFF36 0.56 -0.8
39,755 + GFF36 0.56 -0.2
39,756 - GFF36 0.56 -1.9
39,756 - GFF36 0.56 +0.2
40,429 + GFF37 0.20 -0.9
40,429 + GFF37 0.20 -1.2
40,430 - GFF37 0.20 +0.2
40,430 - GFF37 0.20 -0.8
40,430 - GFF37 0.20 -1.1
40,630 + GFF37 0.41 -0.2
40,889 + GFF37 0.68 -0.5
40,890 - GFF37 0.68 -0.2
41,102 - +1.0
41,102 - -1.0
41,169 + -0.8
41,420 + GFF38 0.82 -0.4
41,420 + GFF38 0.82 -0.2
41,420 + GFF38 0.82 +1.0
41,421 - GFF38 0.83 +0.8
41,421 - GFF38 0.83 +2.2
41,423 + GFF38 0.83 -1.1
41,423 + GFF38 0.83 -0.1
41,423 + GFF38 0.83 -0.7
41,424 - GFF38 0.84 -0.9
41,424 - GFF38 0.84 +0.3
41,424 - GFF38 0.84 -0.4
41,424 - GFF38 0.84 +0.2
41,526 + -0.5
41,526 + -0.8
41,526 + -0.9
41,526 + -0.2
41,527 - -0.1
41,527 - +0.9
41,527 - -0.1
41,623 - GFF39 0.13 -1.8
41,739 + GFF39 0.27 -0.6
41,740 - GFF39 0.27 -0.0
41,740 - GFF39 0.27 -0.5
41,961 + GFF39 0.52 +0.4
41,961 + GFF39 0.52 +0.7
41,961 + GFF39 0.52 +1.5
41,962 - GFF39 0.52 -1.4
42,096 + GFF39 0.68 -1.6
42,096 + GFF39 0.68 +0.6
42,096 + GFF39 0.68 -0.0
42,096 + GFF39 0.68 -0.2
42,097 - GFF39 0.68 -0.1
42,097 - GFF39 0.68 -0.5
42,097 - GFF39 0.68 +0.4
42,097 - GFF39 0.68 -0.3
42,102 + GFF39 0.69 -0.0

Or see this region's nucleotide sequence