Strain Fitness in Variovorax sp. SCN45 around GFF3542

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3540 and GFF3541 overlap by 1 nucleotidesGFF3541 and GFF3542 overlap by 4 nucleotidesGFF3542 and GFF3543 are separated by 5 nucleotidesGFF3543 and GFF3544 overlap by 8 nucleotides GFF3540 - hypothetical protein, at 45,853 to 46,515 GFF3540 GFF3541 - hypothetical protein, at 46,515 to 47,342 GFF3541 GFF3542 - hypothetical protein, at 47,339 to 47,851 GFF3542 GFF3543 - no description, at 47,857 to 48,453 GFF3543 GFF3544 - no description, at 48,446 to 49,057 GFF3544 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.585 kb on + strandat 46.586 kb on - strandat 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.927 kb on + strand, within GFF3541at 47.102 kb on - strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.354 kb on + strandat 47.354 kb on + strandat 47.354 kb on + strandat 47.355 kb on - strandat 47.355 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.895 kb on - strandat 47.895 kb on - strandat 47.909 kb on + strandat 47.909 kb on + strandat 47.910 kb on - strandat 47.927 kb on + strand, within GFF3543at 47.927 kb on + strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.350 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.374 kb on + strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.375 kb on - strand, within GFF3543at 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.465 kb on + strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.466 kb on - strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.483 kb on + strandat 48.484 kb on - strandat 48.484 kb on - strandat 48.484 kb on - strandat 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.687 kb on + strand, within GFF3544at 48.688 kb on - strand, within GFF3544at 48.688 kb on - strand, within GFF3544

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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46,585 + -0.7
46,586 - -2.7
46,774 + GFF3541 0.31 -0.7
46,774 + GFF3541 0.31 -0.3
46,774 + GFF3541 0.31 -0.6
46,774 + GFF3541 0.31 -0.1
46,774 + GFF3541 0.31 -0.5
46,774 + GFF3541 0.31 -1.1
46,775 - GFF3541 0.31 -1.1
46,775 - GFF3541 0.31 -0.4
46,775 - GFF3541 0.31 -0.9
46,775 - GFF3541 0.31 +1.2
46,775 - GFF3541 0.31 +0.2
46,775 - GFF3541 0.31 -0.3
46,775 - GFF3541 0.31 -0.1
46,855 + GFF3541 0.41 +0.8
46,855 + GFF3541 0.41 -0.7
46,855 + GFF3541 0.41 +0.3
46,855 + GFF3541 0.41 +1.3
46,855 + GFF3541 0.41 -1.6
46,855 + GFF3541 0.41 -0.8
46,855 + GFF3541 0.41 -1.7
46,855 + GFF3541 0.41 -0.0
46,855 + GFF3541 0.41 -1.1
46,855 + GFF3541 0.41 -0.2
46,855 + GFF3541 0.41 -0.7
46,855 + GFF3541 0.41 +1.3
46,855 + GFF3541 0.41 -0.6
46,855 + GFF3541 0.41 +0.1
46,856 - GFF3541 0.41 -0.8
46,856 - GFF3541 0.41 -0.0
46,856 - GFF3541 0.41 -0.4
46,856 - GFF3541 0.41 -0.8
46,856 - GFF3541 0.41 +0.1
46,856 - GFF3541 0.41 -0.3
46,856 - GFF3541 0.41 -1.1
46,856 - GFF3541 0.41 -0.2
46,856 - GFF3541 0.41 -0.7
46,927 + GFF3541 0.50 -0.1
47,102 - GFF3541 0.71 -0.3
47,125 + GFF3541 0.74 -0.4
47,125 + GFF3541 0.74 +0.5
47,125 + GFF3541 0.74 +0.3
47,125 + GFF3541 0.74 -0.5
47,126 - GFF3541 0.74 +1.4
47,126 - GFF3541 0.74 -0.0
47,354 + +0.1
47,354 + +0.1
47,354 + -2.4
47,355 - +0.1
47,355 - -0.8
47,365 - -1.1
47,365 - -0.4
47,365 - +0.1
47,592 + GFF3542 0.49 -0.0
47,592 + GFF3542 0.49 -0.9
47,592 + GFF3542 0.49 +0.2
47,592 + GFF3542 0.49 +0.2
47,592 + GFF3542 0.49 +0.7
47,592 + GFF3542 0.49 -0.2
47,592 + GFF3542 0.49 -1.6
47,592 + GFF3542 0.49 -0.0
47,592 + GFF3542 0.49 -1.0
47,592 + GFF3542 0.49 +1.7
47,592 + GFF3542 0.49 -0.3
47,592 + GFF3542 0.49 +0.1
47,592 + GFF3542 0.49 -0.3
47,593 - GFF3542 0.50 +0.3
47,593 - GFF3542 0.50 +0.2
47,593 - GFF3542 0.50 -0.8
47,593 - GFF3542 0.50 -0.3
47,593 - GFF3542 0.50 +0.1
47,593 - GFF3542 0.50 +0.3
47,595 + GFF3542 0.50 -0.5
47,595 + GFF3542 0.50 -0.1
47,595 + GFF3542 0.50 -0.7
47,595 + GFF3542 0.50 -0.8
47,595 + GFF3542 0.50 +0.2
47,595 + GFF3542 0.50 -0.7
47,595 + GFF3542 0.50 +1.0
47,595 + GFF3542 0.50 +0.4
47,595 + GFF3542 0.50 -1.4
47,596 - GFF3542 0.50 -0.2
47,596 - GFF3542 0.50 -0.3
47,596 - GFF3542 0.50 +0.2
47,596 - GFF3542 0.50 -1.1
47,596 - GFF3542 0.50 -0.1
47,596 - GFF3542 0.50 +0.0
47,596 - GFF3542 0.50 -0.8
47,596 - GFF3542 0.50 -0.5
47,596 - GFF3542 0.50 -0.5
47,619 + GFF3542 0.55 -0.3
47,619 + GFF3542 0.55 -0.6
47,619 + GFF3542 0.55 -0.3
47,619 + GFF3542 0.55 -0.4
47,619 + GFF3542 0.55 -1.3
47,620 - GFF3542 0.55 -0.3
47,620 - GFF3542 0.55 -0.8
47,620 - GFF3542 0.55 -0.0
47,894 + -0.3
47,894 + -0.5
47,894 + -0.2
47,894 + -1.3
47,895 - +0.3
47,895 - +0.4
47,909 + +0.1
47,909 + -0.4
47,910 - -0.3
47,927 + GFF3543 0.12 -1.8
47,927 + GFF3543 0.12 -1.1
47,928 - GFF3543 0.12 -0.3
47,928 - GFF3543 0.12 +1.0
47,928 - GFF3543 0.12 -0.2
48,049 + GFF3543 0.32 +1.4
48,049 + GFF3543 0.32 +0.4
48,049 + GFF3543 0.32 -0.2
48,049 + GFF3543 0.32 +1.7
48,049 + GFF3543 0.32 -2.1
48,049 + GFF3543 0.32 -0.1
48,049 + GFF3543 0.32 -0.3
48,049 + GFF3543 0.32 +0.2
48,050 - GFF3543 0.32 +0.2
48,050 - GFF3543 0.32 -1.6
48,050 - GFF3543 0.32 +0.2
48,050 - GFF3543 0.32 -0.7
48,050 - GFF3543 0.32 -0.3
48,050 - GFF3543 0.32 -0.7
48,050 - GFF3543 0.32 +0.6
48,050 - GFF3543 0.32 -0.3
48,050 - GFF3543 0.32 -0.2
48,050 - GFF3543 0.32 +0.1
48,331 + GFF3543 0.79 +0.1
48,331 + GFF3543 0.79 -0.1
48,331 + GFF3543 0.79 -0.7
48,331 + GFF3543 0.79 +0.1
48,332 - GFF3543 0.80 +0.8
48,332 - GFF3543 0.80 +0.6
48,332 - GFF3543 0.80 -0.4
48,350 + GFF3543 0.83 +0.5
48,374 + GFF3543 0.87 +0.5
48,374 + GFF3543 0.87 +1.4
48,374 + GFF3543 0.87 -0.7
48,374 + GFF3543 0.87 -0.1
48,375 - GFF3543 0.87 -0.8
48,375 - GFF3543 0.87 -0.1
48,375 - GFF3543 0.87 +2.4
48,375 - GFF3543 0.87 +0.2
48,465 + -0.3
48,465 + -0.5
48,465 + -2.2
48,465 + -1.0
48,465 + +0.0
48,465 + -0.7
48,465 + +0.7
48,466 - -0.4
48,466 - -0.0
48,466 - -1.4
48,466 - +0.4
48,483 + +0.3
48,483 + -0.8
48,483 + -0.6
48,483 + -0.1
48,483 + -0.7
48,483 + -0.3
48,484 - -0.5
48,484 - +0.3
48,484 - +1.4
48,687 + GFF3544 0.39 +1.1
48,687 + GFF3544 0.39 -0.5
48,687 + GFF3544 0.39 -0.2
48,687 + GFF3544 0.39 -0.1
48,687 + GFF3544 0.39 -0.6
48,687 + GFF3544 0.39 -0.7
48,688 - GFF3544 0.40 +1.2
48,688 - GFF3544 0.40 -0.0

Or see this region's nucleotide sequence