Strain Fitness in Variovorax sp. SCN45 around GFF3270

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
88,770	+		GFF3268	0.78	-0.5
88,770	+		GFF3268	0.78	+0.0
88,770	+		GFF3268	0.78	-0.8
88,770	+		GFF3268	0.78	-0.3
88,770	+		GFF3268	0.78	+0.4
88,771	-		GFF3268	0.78	-0.2
88,771	-		GFF3268	0.78	-1.1
88,771	-		GFF3268	0.78	+0.9
88,771	-		GFF3268	0.78	-0.7
88,771	-		GFF3268	0.78	+0.1
88,771	-		GFF3268	0.78	-0.5
88,780	-		GFF3268	0.79	-0.3
88,869	+				+0.3
88,869	+				-0.1
88,869	+				-1.2
88,870	-				-1.2
88,870	-				+1.3
88,870	-				-1.2
88,870	-				+0.3
88,870	-				+0.7
89,577	-				-0.4
89,749	+		GFF3270	0.21	+1.5
89,749	+		GFF3270	0.21	-0.8
89,750	-		GFF3270	0.21	-0.2
89,750	-		GFF3270	0.21	-0.7
89,750	-		GFF3270	0.21	+0.1
89,750	-		GFF3270	0.21	+0.0
89,750	-		GFF3270	0.21	-0.2
89,750	-		GFF3270	0.21	+0.6
89,889	-		GFF3270	0.46	+0.6
89,889	-		GFF3270	0.46	+0.2
89,889	-		GFF3270	0.46	-0.4
89,889	-		GFF3270	0.46	-0.6
89,889	-		GFF3270	0.46	+0.4
89,889	-		GFF3270	0.46	-0.3
89,889	-		GFF3270	0.46	+0.7
90,035	-		GFF3270	0.73	+1.5
90,085	+		GFF3270	0.82	+0.4
90,086	-		GFF3270	0.82	+0.2
90,086	-		GFF3270	0.82	+0.0
90,086	-		GFF3270	0.82	-0.6
90,086	-		GFF3270	0.82	-0.7
90,086	-		GFF3270	0.82	-0.0
90,086	-		GFF3270	0.82	+0.1
90,086	-		GFF3270	0.82	+2.4
90,086	-		GFF3270	0.82	+0.5