Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3240 and GFF3241 overlap by 4 nucleotides GFF3241 and GFF3242 are separated by 16 nucleotides GFF3242 and GFF3243 are separated by 152 nucleotides
GFF3240 - hypothetical protein, at 54,617 to 55,237
GFF3240
GFF3241 - hypothetical protein, at 55,234 to 55,698
GFF3241
GFF3242 - FIG00444883: hypothetical protein, at 55,715 to 57,067
GFF3242
GFF3243 - Flavin containing amine oxidoreductase, at 57,220 to 58,851
GFF3243
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.830 kb on + strand, within GFF3240 at 54.830 kb on + strand, within GFF3240 at 55.143 kb on - strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.163 kb on + strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.164 kb on - strand, within GFF3240 at 55.176 kb on - strand at 55.202 kb on + strand at 55.234 kb on - strand at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.436 kb on - strand, within GFF3241 at 55.579 kb on - strand, within GFF3241 at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.716 kb on + strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.717 kb on - strand at 55.720 kb on + strand at 55.721 kb on - strand at 55.721 kb on - strand at 55.947 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.001 kb on + strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.002 kb on - strand, within GFF3242 at 56.169 kb on + strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.170 kb on - strand, within GFF3242 at 56.254 kb on - strand, within GFF3242 at 56.299 kb on - strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.448 kb on + strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.449 kb on - strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.682 kb on + strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.683 kb on - strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.694 kb on + strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 56.695 kb on - strand, within GFF3242 at 57.089 kb on + strand at 57.285 kb on - strand at 57.533 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.617 kb on + strand, within GFF3243 at 57.618 kb on - strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.638 kb on + strand, within GFF3243 at 57.639 kb on - strand, within GFF3243
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 54,830 + GFF3240 0.34 -0.2 54,830 + GFF3240 0.34 +0.2 55,143 - GFF3240 0.85 +0.2 55,163 + GFF3240 0.88 -2.2 55,163 + GFF3240 0.88 +0.3 55,163 + GFF3240 0.88 -0.7 55,163 + GFF3240 0.88 +0.5 55,164 - GFF3240 0.88 +0.3 55,164 - GFF3240 0.88 +0.6 55,164 - GFF3240 0.88 +0.3 55,176 - +1.3 55,202 + -1.3 55,234 - +0.3 55,436 - GFF3241 0.43 -0.6 55,436 - GFF3241 0.43 -1.4 55,436 - GFF3241 0.43 -0.2 55,579 - GFF3241 0.74 -2.5 55,716 + -0.3 55,716 + -0.8 55,716 + -0.5 55,716 + +0.3 55,717 - -0.3 55,717 - -1.2 55,717 - +0.1 55,717 - +0.4 55,717 - -0.2 55,720 + -1.0 55,721 - -0.9 55,721 - -0.3 55,947 + GFF3242 0.17 -1.0 56,001 + GFF3242 0.21 +0.2 56,001 + GFF3242 0.21 +0.2 56,001 + GFF3242 0.21 -0.3 56,001 + GFF3242 0.21 +0.8 56,002 - GFF3242 0.21 +0.5 56,002 - GFF3242 0.21 +0.3 56,002 - GFF3242 0.21 -0.9 56,169 + GFF3242 0.34 +2.0 56,170 - GFF3242 0.34 +0.0 56,170 - GFF3242 0.34 -0.3 56,170 - GFF3242 0.34 -0.6 56,170 - GFF3242 0.34 -0.5 56,254 - GFF3242 0.40 +0.9 56,299 - GFF3242 0.43 -0.7 56,448 + GFF3242 0.54 +0.4 56,448 + GFF3242 0.54 +1.8 56,448 + GFF3242 0.54 +0.1 56,449 - GFF3242 0.54 -0.1 56,449 - GFF3242 0.54 +0.0 56,682 + GFF3242 0.71 +0.1 56,682 + GFF3242 0.71 +0.5 56,682 + GFF3242 0.71 +0.4 56,682 + GFF3242 0.71 -0.7 56,683 - GFF3242 0.72 +0.8 56,683 - GFF3242 0.72 +0.5 56,694 + GFF3242 0.72 -1.2 56,694 + GFF3242 0.72 +0.1 56,695 - GFF3242 0.72 -0.7 56,695 - GFF3242 0.72 -0.6 57,089 + -0.5 57,285 - -0.2 57,533 + GFF3243 0.19 +0.9 57,617 + GFF3243 0.24 +0.3 57,617 + GFF3243 0.24 -0.0 57,618 - GFF3243 0.24 -1.1 57,638 + GFF3243 0.26 -1.2 57,638 + GFF3243 0.26 -0.3 57,639 - GFF3243 0.26 -0.4
Or see this region's nucleotide sequence