Strain Fitness in Variovorax sp. SCN45 around GFF2977

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2976 and GFF2977 overlap by 4 nucleotidesGFF2977 and GFF2978 are separated by 7 nucleotidesGFF2978 and GFF2979 are separated by 0 nucleotides GFF2976 - hypothetical protein, at 407,552 to 408,604 GFF2976 GFF2977 - hypothetical protein, at 408,601 to 409,242 GFF2977 GFF2978 - Aromatic ring-cleaving dioxygenase, at 409,250 to 409,597 GFF2978 GFF2979 - Glutathione S-transferase (EC 2.5.1.18), at 409,598 to 410,254 GFF2979 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1 2at 407.756 kb on + strand, within GFF2976at 407.756 kb on + strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.186 kb on - strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.497 kb on + strand, within GFF2976at 408.557 kb on + strandat 408.874 kb on + strand, within GFF2977at 408.970 kb on + strand, within GFF2977at 408.971 kb on - strand, within GFF2977at 408.971 kb on - strand, within GFF2977at 409.046 kb on - strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.109 kb on - strand, within GFF2977at 409.275 kb on - strandat 409.275 kb on - strandat 409.283 kb on + strandat 409.298 kb on + strand, within GFF2978at 409.298 kb on + strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.595 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.600 kb on - strandat 409.600 kb on - strandat 409.600 kb on - strandat 409.695 kb on + strand, within GFF2979at 409.728 kb on + strand, within GFF2979at 409.729 kb on - strand, within GFF2979at 409.729 kb on - strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.758 kb on + strand, within GFF2979at 409.759 kb on - strand, within GFF2979at 409.759 kb on - strand, within GFF2979at 409.809 kb on + strand, within GFF2979at 409.809 kb on + strand, within GFF2979at 409.810 kb on - strand, within GFF2979at 409.810 kb on - strand, within GFF2979at 410.031 kb on + strand, within GFF2979at 410.217 kb on + strandat 410.217 kb on + strandat 410.217 kb on + strandat 410.218 kb on - strandat 410.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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407,756 + GFF2976 0.19 -0.3
407,756 + GFF2976 0.19 +0.1
407,757 - GFF2976 0.19 +1.5
407,757 - GFF2976 0.19 -0.6
407,757 - GFF2976 0.19 -0.7
407,792 + GFF2976 0.23 +1.5
407,792 + GFF2976 0.23 -0.2
407,792 + GFF2976 0.23 -0.8
407,792 + GFF2976 0.23 +0.5
407,792 + GFF2976 0.23 +0.7
407,792 + GFF2976 0.23 -0.4
407,792 + GFF2976 0.23 +0.2
407,792 + GFF2976 0.23 +0.2
407,792 + GFF2976 0.23 -1.3
407,793 - GFF2976 0.23 -0.9
407,793 - GFF2976 0.23 -0.8
407,793 - GFF2976 0.23 +0.3
407,793 - GFF2976 0.23 +0.6
407,793 - GFF2976 0.23 -0.7
407,793 - GFF2976 0.23 -0.7
407,793 - GFF2976 0.23 -0.1
407,793 - GFF2976 0.23 +0.7
407,828 + GFF2976 0.26 +1.0
407,828 + GFF2976 0.26 -1.3
407,828 + GFF2976 0.26 -0.7
407,829 - GFF2976 0.26 +0.9
407,829 - GFF2976 0.26 +0.0
407,831 + GFF2976 0.26 +0.0
407,831 + GFF2976 0.26 -0.4
407,831 + GFF2976 0.26 -0.9
407,831 + GFF2976 0.26 -0.9
407,831 + GFF2976 0.26 -0.1
407,831 + GFF2976 0.26 -0.4
407,831 + GFF2976 0.26 -1.1
407,831 + GFF2976 0.26 +0.5
407,831 + GFF2976 0.26 +0.6
407,831 + GFF2976 0.26 -0.6
407,832 - GFF2976 0.27 -0.0
407,832 - GFF2976 0.27 -0.7
407,832 - GFF2976 0.27 +1.2
407,832 - GFF2976 0.27 +0.9
407,832 - GFF2976 0.27 -1.1
407,832 - GFF2976 0.27 +0.1
407,832 - GFF2976 0.27 -0.2
408,008 + GFF2976 0.43 +0.0
408,008 + GFF2976 0.43 -1.6
408,009 - GFF2976 0.43 -0.7
408,009 - GFF2976 0.43 +0.3
408,009 - GFF2976 0.43 -0.0
408,186 - GFF2976 0.60 -0.6
408,395 + GFF2976 0.80 -0.9
408,395 + GFF2976 0.80 -0.6
408,395 + GFF2976 0.80 -0.1
408,419 + GFF2976 0.82 +0.1
408,419 + GFF2976 0.82 +0.5
408,419 + GFF2976 0.82 -0.6
408,419 + GFF2976 0.82 -1.3
408,419 + GFF2976 0.82 -0.8
408,419 + GFF2976 0.82 -0.8
408,420 - GFF2976 0.82 -0.3
408,420 - GFF2976 0.82 +0.5
408,420 - GFF2976 0.82 +1.2
408,497 + GFF2976 0.90 -0.5
408,557 + -0.3
408,874 + GFF2977 0.43 -0.5
408,970 + GFF2977 0.57 -0.9
408,971 - GFF2977 0.58 -0.4
408,971 - GFF2977 0.58 +0.3
409,046 - GFF2977 0.69 -1.5
409,108 + GFF2977 0.79 -0.4
409,108 + GFF2977 0.79 -1.3
409,108 + GFF2977 0.79 -1.9
409,109 - GFF2977 0.79 +0.1
409,275 - +0.8
409,275 - +0.2
409,283 + -0.3
409,298 + GFF2978 0.14 -0.1
409,298 + GFF2978 0.14 -0.9
409,299 - GFF2978 0.14 -0.5
409,299 - GFF2978 0.14 +0.0
409,299 - GFF2978 0.14 +0.3
409,595 + -1.6
409,599 + -1.1
409,599 + +1.9
409,599 + +0.7
409,599 + -1.1
409,600 - +0.3
409,600 - -0.1
409,600 - +0.1
409,695 + GFF2979 0.15 -1.1
409,728 + GFF2979 0.20 +0.0
409,729 - GFF2979 0.20 -0.8
409,729 - GFF2979 0.20 +1.5
409,758 + GFF2979 0.24 -0.6
409,758 + GFF2979 0.24 -1.1
409,758 + GFF2979 0.24 +0.1
409,759 - GFF2979 0.25 -0.9
409,759 - GFF2979 0.25 -1.9
409,809 + GFF2979 0.32 +1.3
409,809 + GFF2979 0.32 -1.0
409,810 - GFF2979 0.32 -0.4
409,810 - GFF2979 0.32 +0.3
410,031 + GFF2979 0.66 +0.4
410,217 + -0.7
410,217 + +0.2
410,217 + -0.1
410,218 - -0.3
410,218 - -1.2

Or see this region's nucleotide sequence