Strain Fitness in Variovorax sp. SCN45 around GFF2819

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2818 and GFF2819 are separated by 177 nucleotidesGFF2819 and GFF2820 are separated by 49 nucleotidesGFF2820 and GFF2821 overlap by 4 nucleotides GFF2818 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 243,453 to 245,846 GFF2818 GFF2819 - Phosphoenolpyruvate synthase regulatory protein, at 246,024 to 246,851 GFF2819 GFF2820 - ABC-type hemin transport system, ATPase component, at 246,901 to 247,707 GFF2820 GFF2821 - Hemin ABC transporter, permease protein, at 247,704 to 248,738 GFF2821 Position (kb) 246 247Strain fitness (log2 ratio) -2 -1 0 1at 245.122 kb on + strand, within GFF2818at 245.122 kb on + strand, within GFF2818at 245.122 kb on + strand, within GFF2818at 245.122 kb on + strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.123 kb on - strand, within GFF2818at 245.173 kb on + strand, within GFF2818at 245.173 kb on + strand, within GFF2818at 245.173 kb on + strand, within GFF2818at 245.174 kb on - strand, within GFF2818at 245.174 kb on - strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.183 kb on + strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.184 kb on - strand, within GFF2818at 245.323 kb on + strand, within GFF2818at 245.323 kb on + strand, within GFF2818at 245.324 kb on - strand, within GFF2818at 245.324 kb on - strand, within GFF2818at 245.324 kb on - strand, within GFF2818at 245.344 kb on + strand, within GFF2818at 245.344 kb on + strand, within GFF2818at 245.344 kb on + strand, within GFF2818at 245.344 kb on + strand, within GFF2818at 245.344 kb on + strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.345 kb on - strand, within GFF2818at 245.811 kb on + strandat 245.812 kb on - strandat 245.812 kb on - strandat 245.812 kb on - strandat 245.812 kb on - strandat 245.812 kb on - strandat 245.984 kb on + strandat 245.985 kb on - strandat 245.985 kb on - strandat 245.985 kb on - strandat 245.985 kb on - strandat 245.985 kb on - strandat 246.329 kb on - strand, within GFF2819at 246.393 kb on + strand, within GFF2819at 246.393 kb on + strand, within GFF2819at 246.393 kb on + strand, within GFF2819at 246.393 kb on + strand, within GFF2819at 246.393 kb on + strand, within GFF2819at 246.394 kb on - strand, within GFF2819at 246.522 kb on + strand, within GFF2819at 246.522 kb on + strand, within GFF2819at 246.523 kb on - strand, within GFF2819at 246.558 kb on + strand, within GFF2819at 246.846 kb on + strandat 246.846 kb on + strandat 246.847 kb on - strandat 246.914 kb on + strandat 246.914 kb on + strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 246.915 kb on - strandat 247.045 kb on + strand, within GFF2820at 247.045 kb on + strand, within GFF2820at 247.045 kb on + strand, within GFF2820at 247.045 kb on + strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.046 kb on - strand, within GFF2820at 247.059 kb on - strand, within GFF2820at 247.248 kb on + strand, within GFF2820at 247.249 kb on - strand, within GFF2820at 247.249 kb on - strand, within GFF2820at 247.379 kb on + strand, within GFF2820at 247.380 kb on - strand, within GFF2820at 247.644 kb on + strandat 247.644 kb on + strandat 247.707 kb on + strandat 247.707 kb on + strandat 247.707 kb on + strandat 247.707 kb on + strandat 247.707 kb on + strandat 247.707 kb on + strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.708 kb on - strandat 247.817 kb on + strand, within GFF2821

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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245,122 + GFF2818 0.70 -2.2
245,122 + GFF2818 0.70 +0.3
245,122 + GFF2818 0.70 +1.5
245,122 + GFF2818 0.70 -1.6
245,123 - GFF2818 0.70 -1.7
245,123 - GFF2818 0.70 -0.7
245,123 - GFF2818 0.70 -0.9
245,123 - GFF2818 0.70 -2.5
245,123 - GFF2818 0.70 +0.1
245,123 - GFF2818 0.70 -0.8
245,123 - GFF2818 0.70 -0.9
245,123 - GFF2818 0.70 -1.8
245,123 - GFF2818 0.70 -0.3
245,123 - GFF2818 0.70 +0.2
245,123 - GFF2818 0.70 -0.4
245,123 - GFF2818 0.70 -0.4
245,123 - GFF2818 0.70 -0.1
245,123 - GFF2818 0.70 +0.3
245,123 - GFF2818 0.70 -1.7
245,173 + GFF2818 0.72 -2.2
245,173 + GFF2818 0.72 -0.5
245,173 + GFF2818 0.72 -0.4
245,174 - GFF2818 0.72 -0.3
245,174 - GFF2818 0.72 -0.9
245,183 + GFF2818 0.72 -0.6
245,183 + GFF2818 0.72 -1.6
245,183 + GFF2818 0.72 -1.3
245,183 + GFF2818 0.72 -0.6
245,183 + GFF2818 0.72 -1.7
245,183 + GFF2818 0.72 -2.2
245,183 + GFF2818 0.72 +0.2
245,183 + GFF2818 0.72 -0.6
245,183 + GFF2818 0.72 -0.6
245,183 + GFF2818 0.72 -2.3
245,183 + GFF2818 0.72 +0.1
245,183 + GFF2818 0.72 -1.0
245,183 + GFF2818 0.72 -0.6
245,184 - GFF2818 0.72 -1.2
245,184 - GFF2818 0.72 -0.3
245,184 - GFF2818 0.72 -1.8
245,184 - GFF2818 0.72 +0.8
245,184 - GFF2818 0.72 -0.6
245,184 - GFF2818 0.72 +0.0
245,184 - GFF2818 0.72 -0.0
245,323 + GFF2818 0.78 -0.3
245,323 + GFF2818 0.78 +1.1
245,324 - GFF2818 0.78 -0.0
245,324 - GFF2818 0.78 -0.7
245,324 - GFF2818 0.78 +0.2
245,344 + GFF2818 0.79 -0.3
245,344 + GFF2818 0.79 -0.3
245,344 + GFF2818 0.79 -0.2
245,344 + GFF2818 0.79 -2.5
245,344 + GFF2818 0.79 -1.5
245,345 - GFF2818 0.79 +0.2
245,345 - GFF2818 0.79 -0.7
245,345 - GFF2818 0.79 -0.8
245,345 - GFF2818 0.79 -0.4
245,345 - GFF2818 0.79 -2.0
245,345 - GFF2818 0.79 -0.1
245,811 + -0.4
245,812 - -0.8
245,812 - +1.5
245,812 - -0.2
245,812 - -0.7
245,812 - +0.5
245,984 + +0.1
245,985 - -1.3
245,985 - +0.3
245,985 - +0.2
245,985 - -0.3
245,985 - -0.0
246,329 - GFF2819 0.37 -0.8
246,393 + GFF2819 0.45 -1.7
246,393 + GFF2819 0.45 -1.4
246,393 + GFF2819 0.45 -0.5
246,393 + GFF2819 0.45 +0.2
246,393 + GFF2819 0.45 -0.5
246,394 - GFF2819 0.45 -1.5
246,522 + GFF2819 0.60 -0.5
246,522 + GFF2819 0.60 -2.1
246,523 - GFF2819 0.60 -2.0
246,558 + GFF2819 0.64 -2.0
246,846 + -0.1
246,846 + +0.4
246,847 - +0.8
246,914 + -0.5
246,914 + +1.5
246,915 - -1.1
246,915 - -0.8
246,915 - -0.2
246,915 - +0.9
246,915 - -0.3
246,915 - +0.5
247,045 + GFF2820 0.18 -0.4
247,045 + GFF2820 0.18 -0.1
247,045 + GFF2820 0.18 +1.5
247,045 + GFF2820 0.18 -1.1
247,046 - GFF2820 0.18 -0.6
247,046 - GFF2820 0.18 -0.3
247,046 - GFF2820 0.18 -0.3
247,046 - GFF2820 0.18 +0.1
247,046 - GFF2820 0.18 +0.1
247,046 - GFF2820 0.18 +0.6
247,046 - GFF2820 0.18 -0.2
247,059 - GFF2820 0.20 +0.2
247,248 + GFF2820 0.43 -0.7
247,249 - GFF2820 0.43 +0.1
247,249 - GFF2820 0.43 -0.7
247,379 + GFF2820 0.59 -0.6
247,380 - GFF2820 0.59 -1.0
247,644 + -0.4
247,644 + -0.5
247,707 + +0.2
247,707 + -1.4
247,707 + -2.0
247,707 + -0.0
247,707 + -1.3
247,707 + +0.5
247,708 - -0.4
247,708 - +1.0
247,708 - +0.2
247,708 - +1.0
247,708 - -2.1
247,708 - -0.7
247,708 - +1.5
247,708 - -0.3
247,708 - +0.8
247,708 - -0.7
247,708 - -0.4
247,708 - -1.8
247,708 - -0.6
247,708 - -0.4
247,817 + GFF2821 0.11 +1.1

Or see this region's nucleotide sequence