Strain Fitness in Variovorax sp. SCN45 around GFF2730

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2729 and GFF2730 overlap by 1 nucleotidesGFF2730 and GFF2731 are separated by 66 nucleotides GFF2729 - hypothetical protein, at 163,780 to 163,971 GFF2729 GFF2730 - DNA topoisomerase IV subunit A (EC 5.99.1.3), at 163,971 to 166,376 GFF2730 GFF2731 - hypothetical protein, at 166,443 to 167,564 GFF2731 Position (kb) 163 164 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 163.132 kb on + strandat 163.133 kb on - strandat 163.204 kb on + strandat 163.205 kb on - strandat 163.254 kb on + strandat 163.254 kb on + strandat 163.255 kb on - strandat 163.286 kb on + strandat 163.286 kb on + strandat 163.374 kb on + strandat 163.374 kb on + strandat 163.374 kb on + strandat 163.374 kb on + strandat 163.374 kb on + strandat 163.375 kb on - strandat 163.375 kb on - strandat 163.375 kb on - strandat 163.560 kb on + strandat 163.560 kb on + strandat 163.561 kb on - strandat 163.579 kb on + strandat 163.580 kb on - strandat 163.580 kb on - strandat 163.580 kb on - strandat 163.593 kb on + strandat 163.593 kb on + strandat 163.593 kb on + strandat 163.625 kb on + strandat 163.626 kb on - strandat 163.652 kb on + strandat 163.721 kb on + strandat 163.721 kb on + strandat 163.721 kb on + strandat 163.721 kb on + strandat 163.722 kb on - strandat 163.722 kb on - strandat 163.754 kb on + strandat 163.754 kb on + strandat 163.755 kb on - strandat 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.907 kb on + strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 163.908 kb on - strand, within GFF2729at 164.350 kb on - strand, within GFF2730at 164.411 kb on - strand, within GFF2730at 164.411 kb on - strand, within GFF2730at 164.660 kb on - strand, within GFF2730at 164.660 kb on - strand, within GFF2730at 164.660 kb on - strand, within GFF2730at 165.886 kb on + strand, within GFF2730at 165.886 kb on + strand, within GFF2730at 165.887 kb on - strand, within GFF2730at 165.967 kb on + strand, within GFF2730at 165.968 kb on - strand, within GFF2730at 165.968 kb on - strand, within GFF2730at 166.205 kb on - strandat 166.291 kb on + strandat 166.292 kb on - strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.516 kb on + strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.517 kb on - strandat 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.612 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.700 kb on - strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.844 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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163,132 + -0.6
163,133 - +0.2
163,204 + +1.3
163,205 - -2.4
163,254 + +0.9
163,254 + -0.7
163,255 - -0.3
163,286 + +0.3
163,286 + +0.0
163,374 + -1.2
163,374 + +2.2
163,374 + +0.2
163,374 + -0.9
163,374 + +1.0
163,375 - -1.5
163,375 - +1.5
163,375 - -1.2
163,560 + -0.7
163,560 + -0.5
163,561 - +0.1
163,579 + -1.8
163,580 - -1.8
163,580 - -1.3
163,580 - -0.7
163,593 + -0.1
163,593 + +0.4
163,593 + -0.5
163,625 + -0.5
163,626 - -0.2
163,652 + -0.1
163,721 + +0.5
163,721 + +0.3
163,721 + +0.3
163,721 + -0.4
163,722 - +0.3
163,722 - -0.2
163,754 + +0.8
163,754 + -0.4
163,755 - -0.7
163,907 + GFF2729 0.66 -0.8
163,907 + GFF2729 0.66 +0.8
163,907 + GFF2729 0.66 +1.5
163,907 + GFF2729 0.66 -2.2
163,907 + GFF2729 0.66 -0.5
163,907 + GFF2729 0.66 +0.8
163,907 + GFF2729 0.66 -0.5
163,907 + GFF2729 0.66 +0.9
163,907 + GFF2729 0.66 +1.1
163,907 + GFF2729 0.66 -0.2
163,907 + GFF2729 0.66 -0.3
163,907 + GFF2729 0.66 -0.5
163,907 + GFF2729 0.66 +0.2
163,907 + GFF2729 0.66 +0.2
163,907 + GFF2729 0.66 -1.5
163,907 + GFF2729 0.66 -0.7
163,908 - GFF2729 0.67 +0.0
163,908 - GFF2729 0.67 -0.4
163,908 - GFF2729 0.67 -0.2
163,908 - GFF2729 0.67 -1.1
163,908 - GFF2729 0.67 -0.4
163,908 - GFF2729 0.67 -0.3
163,908 - GFF2729 0.67 +1.1
163,908 - GFF2729 0.67 -1.3
163,908 - GFF2729 0.67 -0.9
163,908 - GFF2729 0.67 +0.2
163,908 - GFF2729 0.67 +0.0
163,908 - GFF2729 0.67 -0.8
163,908 - GFF2729 0.67 -0.1
163,908 - GFF2729 0.67 +0.4
163,908 - GFF2729 0.67 -0.1
163,908 - GFF2729 0.67 +1.0
163,908 - GFF2729 0.67 -0.1
163,908 - GFF2729 0.67 +0.6
163,908 - GFF2729 0.67 -1.3
163,908 - GFF2729 0.67 +0.0
164,350 - GFF2730 0.16 -1.8
164,411 - GFF2730 0.18 -2.1
164,411 - GFF2730 0.18 -1.7
164,660 - GFF2730 0.29 -1.6
164,660 - GFF2730 0.29 -0.8
164,660 - GFF2730 0.29 +0.1
165,886 + GFF2730 0.80 -1.1
165,886 + GFF2730 0.80 -1.7
165,887 - GFF2730 0.80 +0.5
165,967 + GFF2730 0.83 +2.1
165,968 - GFF2730 0.83 -0.1
165,968 - GFF2730 0.83 +0.3
166,205 - -1.4
166,291 + -0.3
166,292 - -1.3
166,516 + +0.0
166,516 + -0.7
166,516 + -0.3
166,516 + +0.3
166,516 + -1.2
166,517 - -0.1
166,517 - +1.1
166,517 - -0.8
166,517 - -0.4
166,517 - +1.9
166,517 - +0.5
166,517 - +0.6
166,517 - -0.2
166,606 + GFF2731 0.15 +1.0
166,606 + GFF2731 0.15 -0.2
166,606 + GFF2731 0.15 -0.7
166,607 - GFF2731 0.15 +2.1
166,607 - GFF2731 0.15 +0.8
166,607 - GFF2731 0.15 -0.2
166,607 - GFF2731 0.15 +0.9
166,612 + GFF2731 0.15 +0.4
166,699 + GFF2731 0.23 -1.8
166,699 + GFF2731 0.23 +0.3
166,700 - GFF2731 0.23 -0.4
166,746 + GFF2731 0.27 -0.3
166,746 + GFF2731 0.27 +0.5
166,746 + GFF2731 0.27 -0.6
166,747 - GFF2731 0.27 -1.2
166,747 - GFF2731 0.27 +0.5
166,747 - GFF2731 0.27 -0.2
166,774 + GFF2731 0.30 -1.0
166,774 + GFF2731 0.30 -1.0
166,774 + GFF2731 0.30 -0.7
166,774 + GFF2731 0.30 +0.4
166,774 + GFF2731 0.30 -2.0
166,775 - GFF2731 0.30 -1.7
166,775 - GFF2731 0.30 +0.5
166,798 + GFF2731 0.32 -0.1
166,798 + GFF2731 0.32 -0.9
166,798 + GFF2731 0.32 +1.5
166,798 + GFF2731 0.32 -0.1
166,798 + GFF2731 0.32 +0.6
166,799 - GFF2731 0.32 +0.1
166,799 - GFF2731 0.32 +1.2
166,799 - GFF2731 0.32 +0.5
166,799 - GFF2731 0.32 -0.6
166,844 + GFF2731 0.36 -0.2
166,921 + GFF2731 0.43 -0.0
166,921 + GFF2731 0.43 +0.5
166,921 + GFF2731 0.43 +0.0
166,922 - GFF2731 0.43 +0.5
166,922 - GFF2731 0.43 -0.7
166,922 - GFF2731 0.43 -1.4
166,922 - GFF2731 0.43 +0.1
166,922 - GFF2731 0.43 -0.1
166,922 - GFF2731 0.43 -0.4
167,074 + GFF2731 0.56 -0.2
167,074 + GFF2731 0.56 +0.8
167,075 - GFF2731 0.56 +1.0
167,075 - GFF2731 0.56 -0.4
167,075 - GFF2731 0.56 +0.5
167,075 - GFF2731 0.56 -1.0
167,075 - GFF2731 0.56 +1.2
167,075 - GFF2731 0.56 -0.5
167,075 - GFF2731 0.56 +0.1
167,075 - GFF2731 0.56 -2.0
167,080 + GFF2731 0.57 -0.5
167,080 + GFF2731 0.57 +1.2
167,080 + GFF2731 0.57 -0.5
167,080 + GFF2731 0.57 -0.5
167,080 + GFF2731 0.57 +1.5
167,080 + GFF2731 0.57 -0.3
167,080 + GFF2731 0.57 -0.4
167,080 + GFF2731 0.57 -0.5
167,080 + GFF2731 0.57 -0.2
167,081 - GFF2731 0.57 +0.2
167,081 - GFF2731 0.57 -0.4
167,081 - GFF2731 0.57 -0.1
167,081 - GFF2731 0.57 -0.6
167,081 - GFF2731 0.57 +0.0
167,081 - GFF2731 0.57 +0.6
167,131 + GFF2731 0.61 -0.8
167,131 + GFF2731 0.61 +0.8
167,131 + GFF2731 0.61 +0.7
167,131 + GFF2731 0.61 +0.5
167,131 + GFF2731 0.61 -0.5
167,132 - GFF2731 0.61 -1.2
167,132 - GFF2731 0.61 +0.0
167,132 - GFF2731 0.61 -0.1
167,221 + GFF2731 0.69 +0.5
167,221 + GFF2731 0.69 -0.4
167,221 + GFF2731 0.69 -0.5
167,221 + GFF2731 0.69 +0.2
167,221 + GFF2731 0.69 -1.0
167,221 + GFF2731 0.69 +0.1
167,222 - GFF2731 0.69 +0.9
167,222 - GFF2731 0.69 +0.0
167,222 - GFF2731 0.69 -0.6
167,222 - GFF2731 0.69 +0.6
167,222 - GFF2731 0.69 -0.3
167,222 - GFF2731 0.69 +0.6
167,222 - GFF2731 0.69 +0.0
167,222 - GFF2731 0.69 +0.6
167,222 - GFF2731 0.69 -0.1
167,222 - GFF2731 0.69 +0.5
167,222 - GFF2731 0.69 +0.1
167,222 - GFF2731 0.69 +1.5
167,222 - GFF2731 0.69 -0.0
167,222 - GFF2731 0.69 +0.5
167,234 - GFF2731 0.70 -0.0
167,234 - GFF2731 0.70 +0.2
167,234 - GFF2731 0.70 -1.7
167,234 - GFF2731 0.70 +0.6
167,234 - GFF2731 0.70 +0.1
167,234 - GFF2731 0.70 +0.9

Or see this region's nucleotide sequence