Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2527 and GFF2528 overlap by 1 nucleotides GFF2528 and GFF2529 overlap by 1 nucleotides GFF2529 and GFF2530 are separated by 82 nucleotides
GFF2527 - GCN5-related N-acetyltransferase, at 587,267 to 587,794
GFF2527
GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588
GFF2528
GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484
GFF2529
GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511
GFF2530
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.706 kb on + strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.945 kb on + strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 588.628 kb on + strand at 588.628 kb on + strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.739 kb on + strand, within GFF2529 at 588.739 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.440 kb on + strand at 589.441 kb on - strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.754 kb on + strand, within GFF2530 at 589.754 kb on + strand, within GFF2530 at 589.754 kb on + strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.755 kb on - strand, within GFF2530 at 589.854 kb on - strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.889 kb on + strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 589.890 kb on - strand, within GFF2530 at 590.041 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.042 kb on + strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.043 kb on - strand, within GFF2530 at 590.198 kb on + strand, within GFF2530 at 590.198 kb on + strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.199 kb on - strand, within GFF2530 at 590.288 kb on + strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.289 kb on - strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.339 kb on + strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.340 kb on - strand, within GFF2530 at 590.370 kb on - strand, within GFF2530
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 587,604 + GFF2527 0.64 -0.2 587,604 + GFF2527 0.64 +0.7 587,604 + GFF2527 0.64 +0.1 587,604 + GFF2527 0.64 -0.2 587,604 + GFF2527 0.64 +0.1 587,604 + GFF2527 0.64 -0.9 587,604 + GFF2527 0.64 -0.2 587,605 - GFF2527 0.64 -0.4 587,605 - GFF2527 0.64 +0.6 587,605 - GFF2527 0.64 -0.3 587,706 + GFF2527 0.83 -0.5 587,707 - GFF2527 0.83 +0.0 587,707 - GFF2527 0.83 -0.3 587,945 + GFF2528 0.19 +0.5 587,946 - GFF2528 0.19 +0.4 587,946 - GFF2528 0.19 -0.0 588,628 + +1.3 588,628 + -0.1 588,629 - -1.1 588,629 - -0.0 588,629 - +1.0 588,629 - +0.2 588,739 + GFF2529 0.17 -0.6 588,739 + GFF2529 0.17 -0.6 589,189 + GFF2529 0.67 +0.4 589,189 + GFF2529 0.67 +0.2 589,189 + GFF2529 0.67 +0.8 589,189 + GFF2529 0.67 -0.0 589,189 + GFF2529 0.67 +0.5 589,189 + GFF2529 0.67 -0.0 589,190 - GFF2529 0.67 -0.3 589,190 - GFF2529 0.67 +0.3 589,190 - GFF2529 0.67 +0.1 589,190 - GFF2529 0.67 -0.7 589,190 - GFF2529 0.67 -0.0 589,190 - GFF2529 0.67 +1.7 589,190 - GFF2529 0.67 +1.1 589,190 - GFF2529 0.67 -0.7 589,190 - GFF2529 0.67 -0.4 589,413 + -0.4 589,413 + -0.3 589,413 + -0.8 589,413 + +0.5 589,413 + -1.5 589,413 + -0.3 589,413 + -0.1 589,413 + +0.2 589,413 + +1.2 589,414 - -0.3 589,414 - +1.0 589,414 - -0.7 589,414 - +0.4 589,414 - +0.4 589,440 + -1.5 589,441 - -0.5 589,568 + -1.5 589,568 + -1.3 589,568 + +0.1 589,568 + +1.4 589,568 + -1.1 589,569 - +1.2 589,569 - -0.2 589,569 - +0.2 589,569 - +1.1 589,754 + GFF2530 0.20 -0.3 589,754 + GFF2530 0.20 -0.1 589,754 + GFF2530 0.20 -0.4 589,755 - GFF2530 0.20 +0.1 589,755 - GFF2530 0.20 -0.5 589,755 - GFF2530 0.20 +0.2 589,755 - GFF2530 0.20 +0.6 589,854 - GFF2530 0.30 +0.3 589,889 + GFF2530 0.34 +0.8 589,889 + GFF2530 0.34 +1.1 589,889 + GFF2530 0.34 -0.1 589,889 + GFF2530 0.34 +0.1 589,889 + GFF2530 0.34 -0.9 589,889 + GFF2530 0.34 +2.3 589,890 - GFF2530 0.34 +0.5 589,890 - GFF2530 0.34 +0.1 589,890 - GFF2530 0.34 -1.5 589,890 - GFF2530 0.34 -0.2 589,890 - GFF2530 0.34 +0.2 589,890 - GFF2530 0.34 +0.1 590,041 + GFF2530 0.50 +0.1 590,042 + GFF2530 0.50 +1.9 590,042 + GFF2530 0.50 -0.6 590,042 + GFF2530 0.50 -0.1 590,042 + GFF2530 0.50 -0.2 590,042 + GFF2530 0.50 -0.7 590,042 + GFF2530 0.50 -1.9 590,042 + GFF2530 0.50 -1.5 590,043 - GFF2530 0.50 -0.5 590,043 - GFF2530 0.50 -0.3 590,043 - GFF2530 0.50 -0.1 590,043 - GFF2530 0.50 -0.5 590,043 - GFF2530 0.50 -0.6 590,043 - GFF2530 0.50 -2.9 590,043 - GFF2530 0.50 -0.4 590,043 - GFF2530 0.50 +0.1 590,043 - GFF2530 0.50 -0.8 590,043 - GFF2530 0.50 -0.1 590,043 - GFF2530 0.50 -1.3 590,043 - GFF2530 0.50 -0.0 590,198 + GFF2530 0.67 +2.7 590,198 + GFF2530 0.67 +1.7 590,199 - GFF2530 0.67 -2.1 590,199 - GFF2530 0.67 +0.1 590,199 - GFF2530 0.67 -0.0 590,199 - GFF2530 0.67 -0.7 590,199 - GFF2530 0.67 -0.6 590,288 + GFF2530 0.76 -0.3 590,289 - GFF2530 0.76 +1.0 590,289 - GFF2530 0.76 +1.0 590,289 - GFF2530 0.76 -0.1 590,289 - GFF2530 0.76 -0.1 590,289 - GFF2530 0.76 -0.5 590,289 - GFF2530 0.76 +0.2 590,289 - GFF2530 0.76 -0.2 590,289 - GFF2530 0.76 +0.2 590,289 - GFF2530 0.76 -0.9 590,339 + GFF2530 0.82 +0.0 590,339 + GFF2530 0.82 +0.3 590,339 + GFF2530 0.82 -0.3 590,339 + GFF2530 0.82 -0.4 590,339 + GFF2530 0.82 +0.8 590,339 + GFF2530 0.82 -0.2 590,339 + GFF2530 0.82 -0.9 590,339 + GFF2530 0.82 -0.3 590,340 - GFF2530 0.82 +1.3 590,340 - GFF2530 0.82 +0.1 590,340 - GFF2530 0.82 -0.1 590,340 - GFF2530 0.82 +1.3 590,340 - GFF2530 0.82 +0.1 590,370 - GFF2530 0.85 -0.2
Or see this region's nucleotide sequence