Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2416 and GFF2417 are separated by 0 nucleotides GFF2417 and GFF2418 are separated by 26 nucleotides
GFF2416 - Transcriptional regulator YbhD, LysR family, at 467,072 to 467,983
GFF2416
GFF2417 - putative amidase, at 467,984 to 469,414
GFF2417
GFF2418 - BUG/TctC family periplasmic protein, at 469,441 to 470,430
GFF2418
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 467.035 kb on - strand at 467.415 kb on - strand, within GFF2416 at 467.570 kb on + strand, within GFF2416 at 467.571 kb on - strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.930 kb on + strand at 467.930 kb on + strand at 468.613 kb on - strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.771 kb on + strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 469.652 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.995 kb on - strand, within GFF2418 at 470.012 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.150 kb on + strand, within GFF2418 at 470.309 kb on + strand, within GFF2418
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 467,035 - -0.5 467,415 - GFF2416 0.38 -1.2 467,570 + GFF2416 0.55 -0.5 467,571 - GFF2416 0.55 -1.2 467,732 + GFF2416 0.72 +0.0 467,732 + GFF2416 0.72 -0.5 467,733 - GFF2416 0.72 -0.5 467,733 - GFF2416 0.72 +0.3 467,733 - GFF2416 0.72 -0.4 467,930 + +1.1 467,930 + -0.7 468,613 - GFF2417 0.44 -1.7 468,663 + GFF2417 0.47 +1.7 468,663 + GFF2417 0.47 -0.6 468,663 + GFF2417 0.47 +0.5 468,664 - GFF2417 0.48 +0.7 468,664 - GFF2417 0.48 +0.7 468,664 - GFF2417 0.48 -1.3 468,664 - GFF2417 0.48 -0.3 468,664 - GFF2417 0.48 -0.7 468,664 - GFF2417 0.48 -0.3 468,771 + GFF2417 0.55 -1.3 468,772 - GFF2417 0.55 -0.7 468,772 - GFF2417 0.55 -0.6 468,772 - GFF2417 0.55 -0.4 468,772 - GFF2417 0.55 -0.9 468,772 - GFF2417 0.55 +0.7 469,652 + GFF2418 0.21 +0.1 469,781 + GFF2418 0.34 -0.4 469,781 + GFF2418 0.34 -0.4 469,782 - GFF2418 0.34 -0.2 469,782 - GFF2418 0.34 -2.5 469,782 - GFF2418 0.34 +0.4 469,994 + GFF2418 0.56 -0.3 469,994 + GFF2418 0.56 +1.2 469,994 + GFF2418 0.56 -2.5 469,995 - GFF2418 0.56 +0.7 470,012 + GFF2418 0.58 -0.5 470,108 + GFF2418 0.67 +0.1 470,108 + GFF2418 0.67 +0.7 470,150 + GFF2418 0.72 -0.1 470,309 + GFF2418 0.88 -0.9
Or see this region's nucleotide sequence