Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2175 and GFF2176 are separated by 262 nucleotides GFF2176 and GFF2177 are separated by 35 nucleotides GFF2177 and GFF2178 are separated by 12 nucleotides GFF2178 and GFF2179 are separated by 299 nucleotides GFF2179 and GFF2180 overlap by 7 nucleotides
GFF2175 - hypothetical protein, at 229,232 to 230,764
GFF2175
GFF2176 - no description, at 231,027 to 231,290
GFF2176
GFF2177 - no description, at 231,326 to 231,643
GFF2177
GFF2178 - Methyl-accepting chemotaxis sensor/transducer protein, at 231,656 to 233,323
GFF2178
GFF2179 - hypothetical protein, at 233,623 to 234,042
GFF2179
GFF2180 - hypothetical protein, at 234,036 to 234,383
GFF2180
Position (kb) 231
232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.720 kb on + strand at 230.879 kb on + strand at 230.880 kb on - strand at 230.880 kb on - strand at 231.109 kb on - strand, within GFF2176 at 231.288 kb on + strand at 231.289 kb on - strand at 231.289 kb on - strand at 231.291 kb on + strand at 231.449 kb on + strand, within GFF2177 at 231.450 kb on - strand, within GFF2177 at 231.450 kb on - strand, within GFF2177 at 231.450 kb on - strand, within GFF2177 at 232.445 kb on + strand, within GFF2178 at 232.857 kb on + strand, within GFF2178 at 232.857 kb on + strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 232.858 kb on - strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.016 kb on + strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.017 kb on - strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.094 kb on + strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.095 kb on - strand, within GFF2178 at 233.392 kb on + strand at 233.392 kb on + strand at 233.392 kb on + strand at 233.393 kb on - strand at 233.393 kb on - strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.396 kb on + strand at 233.397 kb on - strand at 233.529 kb on + strand at 233.556 kb on + strand at 233.556 kb on + strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.666 kb on - strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 230,720 + -0.9 230,879 + -0.4 230,880 - -0.2 230,880 - +1.8 231,109 - GFF2176 0.31 +0.5 231,288 + +0.6 231,289 - -0.9 231,289 - +0.1 231,291 + -1.8 231,449 + GFF2177 0.39 +0.5 231,450 - GFF2177 0.39 -0.0 231,450 - GFF2177 0.39 -1.2 231,450 - GFF2177 0.39 -0.3 232,445 + GFF2178 0.47 -0.0 232,857 + GFF2178 0.72 -0.5 232,857 + GFF2178 0.72 +0.1 232,858 - GFF2178 0.72 -1.3 232,858 - GFF2178 0.72 -0.7 233,016 + GFF2178 0.82 -0.8 233,016 + GFF2178 0.82 -0.2 233,016 + GFF2178 0.82 +0.1 233,017 - GFF2178 0.82 -1.1 233,017 - GFF2178 0.82 -0.9 233,017 - GFF2178 0.82 -0.4 233,017 - GFF2178 0.82 -1.5 233,017 - GFF2178 0.82 -1.1 233,094 + GFF2178 0.86 +0.1 233,094 + GFF2178 0.86 -0.8 233,094 + GFF2178 0.86 +2.4 233,095 - GFF2178 0.86 -0.2 233,095 - GFF2178 0.86 +0.2 233,392 + -0.8 233,392 + +0.1 233,392 + -1.5 233,393 - -0.0 233,393 - +0.0 233,396 + +2.0 233,396 + -1.0 233,396 + -1.0 233,396 + +0.2 233,397 - +0.0 233,529 + +0.0 233,556 + -0.3 233,556 + -1.1 233,557 - +1.2 233,557 - -0.5 233,557 - -0.4 233,557 - -0.4 233,666 - GFF2179 0.10 -0.1 233,695 + GFF2179 0.17 -0.9 233,695 + GFF2179 0.17 -0.5 234,004 + -1.8 234,004 + +0.2 234,004 + -0.3 234,004 + -0.6 234,005 - -0.6 234,005 - -0.0 234,005 - -0.3 234,005 - +0.1 234,123 + GFF2180 0.25 -0.9 234,123 + GFF2180 0.25 -0.9 234,123 + GFF2180 0.25 -0.5 234,124 - GFF2180 0.25 -0.6 234,124 - GFF2180 0.25 -0.3 234,124 - GFF2180 0.25 -0.4 234,313 + GFF2180 0.80 -0.8 234,313 + GFF2180 0.80 -1.0 234,313 + GFF2180 0.80 +0.5 234,313 + GFF2180 0.80 +1.1 234,313 + GFF2180 0.80 +0.3 234,314 - GFF2180 0.80 -0.2 234,314 - GFF2180 0.80 -0.8 234,314 - GFF2180 0.80 +0.5 234,314 - GFF2180 0.80 -0.2 234,314 - GFF2180 0.80 +0.1
Or see this region's nucleotide sequence