Strain Fitness in Variovorax sp. SCN45 around GFF1941

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
634,778	+		GFF1940	0.75	-0.3
634,976	+				-0.2
634,977	-				-0.3
634,977	-				-0.2
635,125	+				+0.5
635,125	+				-0.1
635,398	+		GFF1941	0.66	-1.2
635,399	-		GFF1941	0.66	-0.6
635,613	+				-0.3
635,614	-				-0.5
635,617	+				+0.6
635,618	-				+1.7
635,618	-				+0.2
635,618	-				-1.8
635,814	+				+0.4
635,814	+				-1.0
635,814	+				-0.7
635,829	-				+0.0
636,088	-		GFF1943	0.11	-1.6
636,123	+		GFF1943	0.12	-0.7
636,123	+		GFF1943	0.12	+0.0
636,124	-		GFF1943	0.12	+0.4